LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo20g2914	ATGGCCAACAAGATCGCTCTTGGAACCACCAGAGAGGCCACCCAGCCAGATTGCATTCAGGCCCTCGTGGTTGAGTTCATAACCACCTTCCTCTTTGTCTTCGTCGGCGTTGGTTCCGCCATGGCCGCTGGCAAGCTGAGTGGAGATGCACTGGTGGGCTTGTTTGCCGTGGCCGTGGCACATGCACTTGTGGTGGCTGTCATGATTTCAGCCGGTCATATCTCCGGCGGCCACCTCAACCCTGCCGTGACCCTTGGGCTGCTGGTCGGCGGGCACATCACGGTGGTCCGATCGGTCCTTTATTGGATAGATCAGTTGGTGGCATCTGCAGCAGCTTCTTTCCTTCTTTACTACCTTTCCGGAGGACTGGCAACTCCGGTTCACACTCTAGCAAGTGGAGTTGGGTACACTCAAGGGGTGATTTGGGAAATAGTGTTGACTTTCTCGTTGTTGTTTGCTGTCTATGCAACTATGGTGGACCCAAAGAAAGGAGCTCTCGCTGGACATGGGCCCACACTTGTTGGGTTCGTTGTTGGGGCCAACATTCTCGCTGGTGGGGCCTTCTCTGCGGCCTCAATGAACCCAGCAAGATCTTTTGGGCCTGCATTGGTCGCTGGTAACTGGACTGATCACTGGGTTTATTGGGTTGGGCCTCTCATTGGTGGAGGCCTTGCAGGTTTCATCTATGAGCATTTCTTCATTGACCGTACCCATGTTCTGATCCCTCGTGATGAAGAAAACTAA	744	0.539	MANKIALGTTREATQPDCIQALVVEFITTFLFVFVGVGSAMAAGKLSGDALVGLFAVAVAHALVVAVMISAGHISGGHLNPAVTLGLLVGGHITVVRSVLYWIDQLVASAAASFLLYYLSGGLATPVHTLASGVGYTQGVIWEIVLTFSLLFAVYATMVDPKKGALAGHGPTLVGFVVGANILAGGAFSAASMNPARSFGPALVAGNWTDHWVYWVGPLIGGGLAGFIYEHFFIDRTHVLIPRDEEN*	248

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo20g2914	247	Pfam	Major intrinsic protein	14	229	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Amo20g2914	247	Gene3D	Glycerol uptake facilitator protein.	3	242	IPR023271	-
	Amo20g2914	247	PANTHER	AQUAPORIN TIP4-1	3	246	-	-
	Amo20g2914	247	PANTHER	AQUAPORIN-8	3	246	IPR034294	-
	Amo20g2914	247	ProSitePatterns	MIP family signature.	78	86	IPR022357	-
	Amo20g2914	247	SUPERFAMILY	Aquaporin-like	12	240	IPR023271	-
	Amo20g2914	247	PRINTS	Major intrinsic protein family signature	20	39	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Amo20g2914	247	PRINTS	Major intrinsic protein family signature	60	84	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Amo20g2914	247	PRINTS	Major intrinsic protein family signature	97	116	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Amo20g2914	247	PRINTS	Major intrinsic protein family signature	142	160	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Amo20g2914	247	PRINTS	Major intrinsic protein family signature	175	197	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Amo20g2914	247	PRINTS	Major intrinsic protein family signature	212	232	IPR000425	GO:0015267\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo20g2914	Amo-Chr20	130669837	130671841	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo20g2914	3	246	Major Intrinsic Protein MIP	AT2G25810	79.508	3.78e-130	366

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo20g2914	K09873		-	gmx:100811447	414.461

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo20g2914	20	130669837	130671841	Amo20g2914	20	130669837	130671841	ECH