Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2903 ATGATCATTAAGAACCATTTCTTCATGTCCATGATCATGTTCACATTCATCATGGTTCATTTTCTTTTCAGTGTTGTTCATGCTCAAAACAACGATGAAGACATGGCACCCGAGATGTCTGATACACTGCATCCAAGCAAGGCTCTTGTTATATCGGTCCTCACCGTAATCTTCACCATAACATTCTTCTTACTCGCATATGTTCGTTTCTGCAGATTCAATCCAGTTGTTGGGATGTCATATCCGAATCCCAACAACATTCAAGGTCATATCGGGTCAAGATTCTCCGGAATCAACAGGGAACTCGTCGAAAAACTCCCCTTCTTCAGATTCTCTTCTCTCAAGGGCTCCAAAGAAGGTCTAGAATGTACAGTTTGCCTCTCGAAATTCGAGGATTCCGAGGTCCTCAGGCTACTCCCAAAGTGCCAACACGCTTTCCACATTAATTGTATTGACAAGTGGCTCGAAAGCCACTCGACTTGTCCTCTTTGCAGGTACAGGGTGGAACCCGGAGACATCAAGAGTAACGTGCGCTCTCTTAGCTTTGGGTCCCTCCGAGTACCTTCAAATTTAACGGAAGAACCAAACCTCGAGATCTACATCCAAAGGGAACCATCACATCGACGGTCATCAAGATTTGGCTTCTTGGAATTCAGCAAGAGCAAGAAACAAGGAGAAGAAGGTGGTAGTGGTAGTAATAGTAATAATAACAATGATATGAATAAGAATAACCACAAGTTCAACCACAGAATAGTGGTATCTGACGTTGTAACAAGAAGTAGGTGGAGCGATCTAAACTCTTCGGATTTGCTATCTTTGAGCATGGAGATGCTCAACGATGCTTCCAGCGCGAGATTCTCACCGGAAAAGATTGTTCAAGGGGAATATTCAGTTAGTGTTGATGATGAAGACGAGAATTCATTCACAGCACTGAATAGTAGTAACAAGAACAAGGATTGTGGGAAGAAGAGATCAATGTCTGAGATTGCAAATGTTCCGAGATTTGCAGAGATCATGACGATGAAAAAGCAGAACAGTAGTAGTAGTGGTGTTGGAAGGGAAGAAGAGAGGTTCTTGAGGATTTGGATGCCGATTGCTCGTAGAACGGTTCAGTGGTTTGCAAGAAGACAAAGAAACTACTATGATGGTGGTGATCAATTAAGTAGGCACAAACATTTAGGATCAAATGTTTGA 1194 0.4255 MIIKNHFFMSMIMFTFIMVHFLFSVVHAQNNDEDMAPEMSDTLHPSKALVISVLTVIFTITFFLLAYVRFCRFNPVVGMSYPNPNNIQGHIGSRFSGINRELVEKLPFFRFSSLKGSKEGLECTVCLSKFEDSEVLRLLPKCQHAFHINCIDKWLESHSTCPLCRYRVEPGDIKSNVRSLSFGSLRVPSNLTEEPNLEIYIQREPSHRRSSRFGFLEFSKSKKQGEEGGSGSNSNNNNDMNKNNHKFNHRIVVSDVVTRSRWSDLNSSDLLSLSMEMLNDASSARFSPEKIVQGEYSVSVDDEDENSFTALNSSNKNKDCGKKRSMSEIANVPRFAEIMTMKKQNSSSSGVGREEERFLRIWMPIARRTVQWFARRQRNYYDGGDQLSRHKHLGSNV* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2903 397 MobiDBLite consensus disorder prediction 221 247 - -
Amo20g2903 397 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 382 - -
Amo20g2903 397 CDD RING-H2_PA-TM-RING 122 165 - -
Amo20g2903 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 172 IPR013083 -
Amo20g2903 397 SUPERFAMILY RING/U-box 102 170 - -
Amo20g2903 397 MobiDBLite consensus disorder prediction 225 242 - -
Amo20g2903 397 PANTHER RING-H2 FINGER PROTEIN ATL4J 17 382 - -
Amo20g2903 397 SMART ring_2 123 164 IPR001841 -
Amo20g2903 397 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Amo20g2903 397 Pfam Ring finger domain 122 165 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2903 Amo-Chr20 130440305 130441836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2903 40 379 C3H Transcription Factor Family AT2G20030 44.290 2.50e-81 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2903 K10664 - gmx:100803881 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2413 10 84550066 84551549 Amo20g2903 20 130440305 130441836 hybridization