Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2901 ATGACCGGTCTAGTTCTCAGAACCTTGGTGTGGAAGCAGAGCATAACTGTAACTCAATTTCGCTTCCGAAGAGGATCCCTCCCAATGAGAAGGTTCACGTGGTTTACGCCGTATCGCCGCCGTTTGCTCTCTTTTGCGTTTTCAGAACCTGTTGTCCATAGAGGACACTGCTTCACCGAATTATTGCCTTTTCGCCAATCGCCGTTTCTCAGTCGAGCTTTGTTCAATCGCAGTAATGTCCCAAAATCGGAGGAGTTTCTGAGTTTGAGTATACCATTGAGATATCGATATATTCATGCTGCAGCATTTTCGACATCGGTTGAGCAGGATTATTATCAAGTTCTTGGCATTTCTGAGAACGCCACTCAGGATGAGATAAAGAAGGCGTTTCTGTTGCTTGCTAAAAAGTACCATCCAGATGCAAATAAGAATAATCCATCTGCAAAGAGGAAATTTCAAGATATAAGAGAAGCTTATGAGACGTTGAGAGATTCTAAAAAGAGGGGCCAATATGACAAGATGAAGAAGCAAAGCCGTGGTTCACAGAACATAGAATATGACAACGACAACGATGATTTTGCAGAAAGGTTTCAAAATGCGAAAGAAAGGTTTCAAAATGGTTTTCACCATGAGTTTTCTTCTTCATTTCATACAGTATTCTCGGAGCTATTTGAAGAAGAAATCACTCATTCTTCATCAAGTATAGAGGTGGAGTTGTCCCTTACTTTCTCAGAAGCTGCAAGAGGGTGCACTAAACATGTGTCATTTGATGCATTCGTTCCATGTGATTATTGTGATGGGAGAGGGTATCCACCACGTGCGAAGGCTAAAGTTTGTCCAACATGCCGGGGCTTAGGTCGAGTAACAATACCTCCATTTACATCAACATGCATTACCTGTAAAGGATCAGGTCGCGTCATTAAGGATTTCTGTACGTCATGTAGAGGATCTGGGGTGGTTGAAGGGATTAAAGAGGTTAAAGTTACAATACCAGCAGGTGTGGATACTGGAGATACAATCCATGTGCCAGAGGCCGGGAATGCCGTTAAAAGTGGAGCTCGACCTGGGAGTTTATACATCAAAATCAAGGTCGCCGAGGATTCAGTRTTTGCCAGGGATGGTGCAGATATCTATGTGGACTCTAATATTAGCTTTACGCAGGCTATTCTTGGTGGCAAAGTTGATGTGCCTACTCTATCTGGGAAGATGCAAGTAAAGATACCCAAGGGTGTTCAACCAGGGCAGCTACTAGTATTACGAGGAAAAGGACTACCAAYGCATGGTTATCTTGTACATCATGGGGATCAGTATGTGRGTTTTCGTATTAACTTCCCCACTAATATTAATGAACGACAACGTGCTATACTTGAAGAACTAGCAGAGGAGGAAATAAAGCAGGAAAACTGCTCAACATTTGAAGGAAACTGGTGGAAGCAAATTATTGAACACTTGAACAGTCCAAATATTATGGTAGAACTATCTGTGCTGATCTTAATCCTCGTCCTCATGCACAAATTGTTGAGCTGA 1527 0.4231 MTGLVLRTLVWKQSITVTQFRFRRGSLPMRRFTWFTPYRRRLLSFAFSEPVVHRGHCFTELLPFRQSPFLSRALFNRSNVPKSEEFLSLSIPLRYRYIHAAAFSTSVEQDYYQVLGISENATQDEIKKAFLLLAKKYHPDANKNNPSAKRKFQDIREAYETLRDSKKRGQYDKMKKQSRGSQNIEYDNDNDDFAERFQNAKERFQNGFHHEFSSSFHTVFSELFEEEITHSSSSIEVELSLTFSEAARGCTKHVSFDAFVPCDYCDGRGYPPRAKAKVCPTCRGLGRVTIPPFTSTCITCKGSGRVIKDFCTSCRGSGVVEGIKEVKVTIPAGVDTGDTIHVPEAGNAVKSGARPGSLYIKIKVAEDSVFARDGADIYVDSNISFTQAILGGKVDVPTLSGKMQVKIPKGVQPGQLLVLRGKGLPXHGYLVHHGDQYVXFRINFPTNINERQRAILEELAEEEIKQENCSTFEGNWWKQIIEHLNSPNIMVELSVLILILVLMHKLLS* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2901 508 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 249 320 IPR036410 -
Amo20g2901 508 MobiDBLite consensus disorder prediction 168 189 - -
Amo20g2901 508 CDD DnaJ 110 164 IPR001623 -
Amo20g2901 508 Gene3D - 258 291 - -
Amo20g2901 508 Gene3D - 292 325 - -
Amo20g2901 508 CDD DnaJ_zf 262 318 IPR001305 GO:0031072|GO:0051082
Amo20g2901 508 SUPERFAMILY HSP40/DnaJ peptide-binding domain 369 456 IPR008971 GO:0006457|GO:0051082
Amo20g2901 508 SUPERFAMILY Chaperone J-domain 109 178 IPR036869 -
Amo20g2901 508 SUPERFAMILY HSP40/DnaJ peptide-binding domain 235 365 IPR008971 GO:0006457|GO:0051082
Amo20g2901 508 Gene3D - 234 363 - -
Amo20g2901 508 ProSiteProfiles Zinc finger CR-type profile. 249 323 IPR001305 GO:0031072|GO:0051082
Amo20g2901 508 CDD DnaJ_C 233 448 - -
Amo20g2901 508 Hamap Chaperone protein DnaJ [dnaJ]. 107 467 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Amo20g2901 508 Gene3D - 366 474 - -
Amo20g2901 508 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 73 485 - -
Amo20g2901 508 Pfam DnaJ domain 110 172 IPR001623 -
Amo20g2901 508 ProSiteProfiles dnaJ domain profile. 110 175 IPR001623 -
Amo20g2901 508 ProSitePatterns Nt-dnaJ domain signature. 152 171 IPR018253 -
Amo20g2901 508 Pfam DnaJ central domain 262 318 IPR001305 GO:0031072|GO:0051082
Amo20g2901 508 Pfam DnaJ C terminal domain 235 445 IPR002939 -
Amo20g2901 508 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 73 485 - -
Amo20g2901 508 PRINTS DnaJ domain signature 147 167 IPR001623 -
Amo20g2901 508 PRINTS DnaJ domain signature 112 130 IPR001623 -
Amo20g2901 508 PRINTS DnaJ domain signature 130 145 IPR001623 -
Amo20g2901 508 SMART dnaj_3 109 167 IPR001623 -
Amo20g2901 508 Gene3D DnaJ domain 106 233 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2901 Amo-Chr20 130352883 130369724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2901 101 177 C2H2 Transcription Factor Family AT1G74250 37.805 3.64e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2901 - - aip:107622493 975.696