Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2882 ATGAGCATTACTGAACCAAATTACAACACCTCAGAAACCGAAAGCAGTAGTGCTTCAAACTCAACTACAAAAACTGTAACCGCAACCGCAACGGAAACCGCAACTGTAACCGTAACTGCCAAGCGCATTCGAGATTCTTCTAACAAACACCCCGTGTACCGGGGTGTACGGATGAGGAATTGGGGGAAGTGGGTATCTGAAATCAGAGAGCCGCGCAAGAAGTCTCGTATATGGCTTGGAACATTCTCCACTCCGGAAATGGCCGCCAGGGCTCACGACGTCGCCGCCCTCAGCATAAAAGGCTCCGCCGCTATTCTTAACTTTCCCAACCTCGTACACTCCCTCCCCCGCCCCGCTTCCCTCGCCCCTCGCGACGTCCAAGCTGCGGCCGCAAAAGCCGCCAAAATGGTCAAATTCGATTCTCCGACGACGTCCTCGTCGTCGTTATCTTCGTCCTCGTCGGTGGAATTGTGCTCCGATGAGGAGGAGTTGAGCGAGATCATAGAGCTTCCCAGGCTGGAGAGTGGCGAGTTGGATAAGGAGTTCGTTTTCGCTGACTCCGTGGATGGGTGGATGTACCAGCCGCCGCCTTGGTTTTCGTCGGAGAGCATGGCGGCGGCGTCGACGGAGGAGGAGGACGTTGTTGAAGATGGTGTTGTAAGTGCTTCTGGAAGTTCGCTTTGGAATTATTATTATAATATTATTACTAATTAA 714 0.5252 MSITEPNYNTSETESSSASNSTTKTVTATATETATVTVTAKRIRDSSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGSAAILNFPNLVHSLPRPASLAPRDVQAAAAKAAKMVKFDSPTTSSSSLSSSSSVELCSDEEELSEIIELPRLESGELDKEFVFADSVDGWMYQPPPWFSSESMAAASTEEEDVVEDGVVSASGSSLWNYYYNIITN* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2882 237 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Amo20g2882 237 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Amo20g2882 237 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Amo20g2882 237 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
Amo20g2882 237 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 9 215 - -
Amo20g2882 237 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Amo20g2882 237 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Amo20g2882 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 215 - -
Amo20g2882 237 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Amo20g2882 237 MobiDBLite consensus disorder prediction 1 28 - -
Amo20g2882 237 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2882 Amo-Chr20 129981770 129983038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2882 16 201 AP2-EREBP Transcription Factor Family AT5G11590 58.128 1.20e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo20g2882 AP2 7.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2882 K09286 - cit:102608812 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2882 20 129981770 129983038 Amo20g2882 20 129981770 129983038 ECH
Amo20g2882 20 129981770 129983038 Amo06g3124 06 98380724 98384753 PCT