Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2856 GCTTTCTCTCACGCTCCTCTCCAAGGAACTAGCCGGAGAGCACCGCAAGCCAGATACGCTCTTCTACGATCGCAATATGTGCAAATTCTCCACCCAAAACTCTATTCAAAGGCGTTCCTCTTCTTTACCCTAAGAATGCACGATGTGCCCAAGGTTGGCATGTGTTTTGGAACCATTGAAGATGCAAATCAATTTTATCAGAATTATGCCAAGCGCATTGGTTTTGTTACTAAGATAAGGTTTACCCGAAGAGTTGGTAAAGATAAGGTTCCTAAGAATCAAATGATCACTTGCAATAGGGAGGGGAAACGCAAGTCTAGAGTTTCACCAATAGAAAAGACCAACCCTAGAAKCAACTACAATTMCCCCGCAAGGATTTCTATTAGGTTGAATAAGGAGGGTCTTTGGATTATATRGAAGGTGTGTTTGGATCATTCACATCCTTGTGATCCAGAGATGGCAAAACTGTTGACACATAATAGAGAGATGACTATGCACATGTGTCGAGTCATTGAGAGGAATGATGAAGCAGGTGTGAGACCAAGCAAAACATATCAAGTATTGGTGGGTGKAGCGGGGGATATCTATGAAGAAAGACATCGATGGGTTCCAATTTTTCTTYACAACTTTTTTTGGGCTGGTATGAGATCCACACAACGAAGTGAGAGTATGCATTCATATTTTGACAAATTTATAAATAACAAGAGCTTGTTGATTCAATTTGTCAAACAATATGACAATTGRCTTGGATGGAAAGAGCAACAAGAAAGGGAGYCTGATGTTGAAGACTATAAATCAATAATACCTTGTGCCACTAATTCCTTAATAGAGAAGCAATTTCAAGGTGCATATACTAATGCAAAGTTTAAGGAAGTACAAAAGCAATTTAGAAAGAAAGCAAATTGTATTTTGCACCTTATGAAAGTAGTTTCTACATCTAAAGTCTATTCTATTTTGGAGGATGTATCTACTTCTAAAGAGAGGGTTTATGAAGTTAACTACAATGCGGAAACGAAGGATATTACATGCATGTGTCAAATGTTTGAATCAAGAGGCATATTATGCCGTCATAGCTTGGTTGTCCTAGGGCATGAACGCGTGAGAGAAATTCCAAGAAGATATATTTTGGACCGTTGGAGCAAACTTGTGAAGCGAAGACACAGTGATATTAAGAGCAGCCATGATCCAAGTTTGTTGGATCCAAAAACAAAGAGGTTTGATGATTTATGCTCCCATTCAAWCAGTGTTGCTCAATTTGCATCCCAAACAAAGGAAACAAGTGATATCTTACATCGTTATCTTGATATGGCTATGGCGGAGTGCCAAAAGCATGTTGCTAACTCATCATCTAATGCCAATGAGTTAGATAATTTGCTTACATTAGAAGATGGTGGTAAAGATGGTGGTAAAGATGCACTGTCCATTTTTGTAGGAGGCTGTATAATAAGCATTCAAGATATTAAAAGCCCTCCTTATGTGTCCACTAAGGGTCGTCCAACAAATAGGCTAGGATCTGAAAAAGACAAGATGATAAAAAAGAAGACCGAGGCAAAGAAGAGAAAAAGTGAGATAACCGAAAAAGAGGATAATCAACATATTGGAGATAGTCAAAGTCTCCCTTTCAACGAACAGCTTCAAGATGCTAACTACAATGTTAATGAGGGATTTGAATCTGATTCAATGGGAGGATCAATGGGAGGATTCATGTCCTTATTGAACTCAATCCATTCATACCAATTCTCAAATGTCGATTGA 1755 0.3835 AFSHAPLQGTSRRAPQARYALLRSQYVQILHPKLYSKAFLFFTLRMHDVPKVGMCFGTIEDANQFYQNYAKRIGFVTKIRFTRRVGKDKVPKNQMITCNREGKRKSRVSPIEKTNPRXNYNXPARISIRLNKEGLWIIXKVCLDHSHPCDPEMAKLLTHNREMTMHMCRVIERNDEAGVRPSKTYQVLVGXAGDIYEERHRWVPIFLXNFFWAGMRSTQRSESMHSYFDKFINNKSLLIQFVKQYDNXLGWKEQQEREXDVEDYKSIIPCATNSLIEKQFQGAYTNAKFKEVQKQFRKKANCILHLMKVVSTSKVYSILEDVSTSKERVYEVNYNAETKDITCMCQMFESRGILCRHSLVVLGHERVREIPRRYILDRWSKLVKRRHSDIKSSHDPSLLDPKTKRFDDLCSHSXSVAQFASQTKETSDILHRYLDMAMAECQKHVANSSSNANELDNLLTLEDGGKDGGKDALSIFVGGCIISIQDIKSPPYVSTKGRPTNRLGSEKDKMIKKKTEAKKRKSEITEKEDNQHIGDSQSLPFNEQLQDANYNVNEGFESDSMGGSMGGFMSLLNSIHSYQFSNVD* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2856 584 MobiDBLite consensus disorder prediction 513 533 - -
Amo20g2856 584 Pfam SWIM zinc finger 330 363 IPR007527 GO:0008270
Amo20g2856 584 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 47 162 IPR031052 GO:0006355
Amo20g2856 584 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 195 450 IPR031052 GO:0006355
Amo20g2856 584 SMART 26again6 341 368 IPR006564 GO:0008270
Amo20g2856 584 Pfam FAR1 DNA-binding domain 64 150 IPR004330 -
Amo20g2856 584 MobiDBLite consensus disorder prediction 513 541 - -
Amo20g2856 584 PANTHER OS03G0843700 PROTEIN 47 162 - -
Amo20g2856 584 ProSiteProfiles Zinc finger SWIM-type profile. 330 366 IPR007527 GO:0008270
Amo20g2856 584 Coils Coil 507 527 - -
Amo20g2856 584 PANTHER OS03G0843700 PROTEIN 195 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2856 Amo-Chr20 129324376 129328792 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo20g2856 FAR1 1e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2856 - - ahf:112717726 721.079