Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2847 ATGATGGCGGTGAGTTCGGGGAGCAAAGAAGGAGGAGGGAGTAAGGTGTTGATGGACAACGGCAAGTACGTGAGGTACACGCCGGAGCAGGTGGAGGCACTGGAGAGGCTCTACCATGAATGCCCCAAACCAAGCTCCCTTCGCCGCCAGCAACTCATCAGAGACTGCCCTATTCTCTCCAACATCGAGCCCAAACAGATCAAGGTCTGGTTCCAAAATCGAAGATGCCGAGAGAAGCAGCGGAAAGAGGCGTCACGGCTGCAAGCTGTAAACAGGAAGCTGACAGCAATGAATAAACTGCTGATGGAGGAAAACGACAGATTGCAGAAGCAAGTCTCTCACCTCGTCTATGAGAACACCTTTTTCCGCCAACACACTCAACAAAATGCGGCGCTTGCCACCACAGACACCAGCTGTGAGTCGGTGGTAACAAGCGGTCAGCGCAACTTGACACCTCAGCATCCGCCAAGGGATGCAAGCCCTGCAGGACTTTTGTCGATTGCAGAGGAGACTTTAGCAGAGTTTCTATCAAAGGCCACTGGAACCGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCATGCGGCCTTGTGGGTCTAGAACCTGCCAGGGTTGCAGAAATACTCAAAGATCGGTTATCATGGTATCGTGATTGCCGAACCGTGGATGTTCTAAATGTAATGTCCACGGGAAATGGAGGAACCATTGAACTTCTTTACATGCAGTTGTATGCTCCAACAACCTTGGCACCTGGCCGTGACTTCTGGTTGCTGCGCTACACATCTCTTTTGGAGGATGGTAGTCTTGTGGTGTGTGAAAGATCACTTAACAACACTCAGAACGGTCCTGCTATGCCAGCAGTGCAGCATTTTGTTAGAGCAGACATGATGCCAAGTGGGTATCTTATTAGGCCTTGTGAAGGAGGAGGGTCCATTATTCATATTGTTGATCACATAATCTTAGAGCCATGGAGTGTACCTGAAGTTTTGCGTCCACTTTATGAATCGTCAATGCTACTTGCTCAAAGAACAACCATGGCGGCTTTACGGCATTTAAGGCAGATATCTCAAGAAGTTTCTCAGCCAAGTGTGTCAGGATGGGGAAGAAGGCCTGCGGCTCTACGCGCGCTTAGTCAGCGATTGAGCAAGGGATTCAATGAAGCAGTTAATGGTTTTACTGATGATGGGTGGTCCTTGTTGGAGAGTGATGGCATTGATGATGTCACGCTTCTTGTGAACTCATCACCTAGCAAGATGATGGGAGCAAACCTCGGCTACAATGGTGGTGGATTCGCATCTGTCACTAGTTCTGTGCTTTGTGCCAAAGCATCCATGTTGTTGCAGAATGTCCCTCCAGCAATTCTTCTTAGATTCTTGCGGGAGCACCGGTCTGAGTGGGCTGATAGCAGCATTGACGCTTATTCGGCTGCCGCCATCAAAGCTGGTCCCTGTAACTTGCCTGGTGTCCGAGCAGGCGGTTTCGGGGGTCAGGTCATTCTTCCATTGGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTGATTAAGCTTGAAAACATGGGTTACTATAGGGATGATATGACTATACCTGGTGATGTTTTCCTCTTGCAGCTCTGCAGTGGAGTGGATGAGAATGCAGTTGGCACAAGTGCAGAACTCATATTTGCTCCCATTGATGCATCCTTTTCTGATGATGCACCAATTTTACCTTCCGGCTTTCGCATCATACCTCTCGATTCAACCTCGGCAAGTCTTGATGCCGCTAGTCCTAACCGGACGCTTGATCTGGCGTCGGCGCTGGAAGTTGGAACAGCAGGGAGCAAAGCTGGCGGAGAAAACTCAAGCCATTCCGGGAGCACAAAGTCGGTGATGACAATTGCATTTCAGTTTGCATTTGAAGTCCATCTTCAGGACAACATTGCAACCATGGCTAGGCAGTATGTTAGGAGTATCATTGCATCTGTTCAAAGGGTTTCACTAGCCCTTTCGCCGTCCCGATTCGGTTCTCAAAATGCTTTCCATTTGCCTCCTGGTACCCCTGAGGCACAAACACTTGCTAGGTGGATTTCTAGCAGCTATAGATTCTATCTTGGGGTAGAACTGTTGAAGAGTGAGGGCAATGAACCCATTCTCAAATCTCTTTGGCATCACACTGATGCTGTTTTGTGCTGCTCTCTCAAGGCATTACCTGTTTTCACTTTTGCAAATCAAGCTGGCCTTGACATGCTAGAAACAACTTTGGTTGCACTTCAAGACATCACTCTTGAAAAGATCTTTGATGACAATGGAAAGAAAACTCTCTGCTCTGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATACAAGGTGGGATATGTTTGTCGAGCATGGGAAGGCCAGTGTCATATGAGAGAGCAGTGGCATGGAAAGTCTTGAATGAAGAAGAAACGGCTCACTGTATCTGCTTCATGTTCATCAATTGGTCTTTTGTCTGA 2541 0.4856 MMAVSSGSKEGGGSKVLMDNGKYVRYTPEQVEALERLYHECPKPSSLRRQQLIRDCPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENTFFRQHTQQNAALATTDTSCESVVTSGQRNLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRLSWYRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAMPAVQHFVRADMMPSGYLIRPCEGGGSIIHIVDHIILEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVSGWGRRPAALRALSQRLSKGFNEAVNGFTDDGWSLLESDGIDDVTLLVNSSPSKMMGANLGYNGGGFASVTSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCNLPGVRAGGFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTIPGDVFLLQLCSGVDENAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSTSASLDAASPNRTLDLASALEVGTAGSKAGGENSSHSGSTKSVMTIAFQFAFEVHLQDNIATMARQYVRSIIASVQRVSLALSPSRFGSQNAFHLPPGTPEAQTLARWISSSYRFYLGVELLKSEGNEPILKSLWHHTDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCSEFPQIMQQGFMCIQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2847 846 CDD homeodomain 22 82 IPR001356 GO:0003677
Amo20g2847 846 Pfam MEKHLA domain 705 845 IPR013978 -
Amo20g2847 846 Gene3D - 201 382 IPR023393 -
Amo20g2847 846 PANTHER CLASS III HD-ZIP PROTEIN CNA1 8 846 - -
Amo20g2847 846 Pfam START domain 167 375 IPR002913 GO:0008289
Amo20g2847 846 CDD START_ArGLABRA2_like 161 376 - -
Amo20g2847 846 Pfam Homeodomain 22 80 IPR001356 GO:0003677
Amo20g2847 846 CDD bZIP 74 113 - -
Amo20g2847 846 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Amo20g2847 846 SUPERFAMILY Homeodomain-like 22 85 IPR009057 -
Amo20g2847 846 Coils Coil 77 111 - -
Amo20g2847 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 8 846 IPR044830 GO:0003700
Amo20g2847 846 SUPERFAMILY Bet v1-like 166 377 - -
Amo20g2847 846 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289
Amo20g2847 846 SMART HOX_1 19 85 IPR001356 GO:0003677
Amo20g2847 846 SMART START_1 166 376 IPR002913 GO:0008289
Amo20g2847 846 Gene3D - 15 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2847 Amo-Chr20 128840772 128846941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2847 11 846 Homeobox Transcription Factor Family AT4G32880 79.643 0.0 1393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo20g2847 START 1.1e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2847 K09338 - gmx:100815727 1560.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2847 20 128840772 128846941 Amo20g2847 20 128840772 128846941 ECH
Amo10g2367 10 82569253 82575455 Amo20g2847 20 128840772 128846941 hybridization