Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2830 ATGCCTGAGCTCCGTTCCCGACAACGCACAACGAACAATAACAAAGAACTGTTAGGCGCTGCTGATCCGAATCCGATTGTTCTGCCGGACCCGCCGGTGGCCGGAGGATCCAAACCGAGGAAGAGAACATCTGTTGCTGCACCGAACAGGAGGAATCGGAGGCAGAAAAACGCGATCGCCGCTGAAGCCTCGGCCGATGAAGTTGGGAAAGTTGTGAACGACGTTGCAATCAAGAAGAACAAGAACAACGCTGGAAGTATTAGGGTTTTGAGGGAGGAGGACATGGATGATTACGATAGCGGCGGTCGAAGCGCCGACAAGGCTCCGGGAGCTGAAGAGGAAGGAACCACTGCTCCAGTCCCAGAGAAGGTCCAGGTTGGTGGTTCACCGATGTACAGGGTTGAAGGAAGACTTGGGAAGGGAGGGTTTGGACAGGTTTATGTTGGTCGTCGCGTTGGAGCCACTAGCTACGGTGATCGAACTGGTGCTGGGGCTATTGAGGTAGCGTTGAAATTTGAACACAGAAGCAGTAAGGGTTGTAATTATGGACCCCCATATGAGTGGCAGGTTTACAATGCATTAGGTGGCAGTCATGGTGTTCCCCGAGTTCATTACAAAGGGCGGCAAGGTGATTACTATGTTATGGTTATGGATATGCTTGGCCCTAGTCTATGGGATGTCTGGAATAACTACTCACACACGATGTCCACTGAAATGGTGGCATGCATTGCGATTGAGGCTATCTCTATATTGGAGAAGATACATTCGAGAGGGTATGTTCATGGTGACGTAAAGCCTGAGAACTTTTTGCTTGGCCCACCGGGAACGTCAAATGCAAAGAAGCTGTTTTTAGTTGATCTTGGATTAGCAACTCGATGGCGTGATAGTTCTACCGGACTTCATGTTGAGTATGATCAGCGTCCAGATGTATTTAGGGGTACAGTTCGTTATGCTAGTGTGCATGCTCATCTTGGTAGAACTGGTAGCAGGAGAGATGACTTAGAATCTCTTGCTTACACACTTGTGTTCCTTCTTCGTGGTCGGCTTCCTTGGCAAGGATTTCAGGGAGAAAACAAAGGATTTCTTGTTTGCAAGAAGAAGATGGCCACTTCTCCAGAAACTTTATGTTGCTTTTGTCCTCAACCTTTCCGGCAGTTTGCTGAATATGTGGTGAATTTGAAGTTTGATGAAGAGCCAAATTACGCTAAATACATATCCCTTTTTGATGGAATTGTAGGTCCAAATCCAGCCATCAGGCCAATAAACACTGAGGGTGCACAAAAGCTTATATGTCAGGTTGGACAAAAGCGAGGACGAGTGGCAATGGAAGAGGATGATGATGAACAACCAAAGAAGAAGGTCAGAATGGGAATGCCTGCAACGCAGTGGATTAGTGTTTACAATGCTCGCCGACCAATGAAGCAAAGGTACCATTACAATGTTGCTGATGTGCGACTTGCCCAACACATTGATAAGGGAAATGAGGATGGGTTATATATCAGTTGTGTAGCTTCTTGTTCTAATCTCTGGGCACTCATTATGGATGCTGGCACTGGTTTCACTTCTCAAGTTTACGAACTATCTCCCTATTTTCTTCACAAGGAATGGATTATGGAACAGTGGGAGAAAAATTATTACATCAGTGCTGTAGCTGGAGCTAATAATGGAAGTTCTTTGGTTGTAATGTCTAAAGGGACCCATTACTTGCAACAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAGTGGAGAGAAGGATTTTATGTCACTGCTATGGCTACTGCTGGCAGTAAATGGGCAATTGTAATGTCCCGCGGTGCTGGATTTTCAGATCAGGTTGTGGAGCTTGATTTCCTGTATCCTAGTGAAGGGATTCACCATAGGTGGGATGGTGGTTATCGAATCACCTCAACTGCTGCAACATGGGACCAAGCTGCTTTTATTCTTAGTGTCCCAAGAAGAAAACCATCTGATGAAACTCAAGAGACGCTACGCACATCTGCTTTTCCCAGTACTCATGTCAAGGAAAAATGGGCAAAGAACCTGTACATTGCGTCTGTTTGTTATGGAAGAACAGTTTCATGA 2100 0.4576 MPELRSRQRTTNNNKELLGAADPNPIVLPDPPVAGGSKPRKRTSVAAPNRRNRRQKNAIAAEASADEVGKVVNDVAIKKNKNNAGSIRVLREEDMDDYDSGGRSADKAPGAEEEGTTAPVPEKVQVGGSPMYRVEGRLGKGGFGQVYVGRRVGATSYGDRTGAGAIEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNYSHTMSTEMVACIAIEAISILEKIHSRGYVHGDVKPENFLLGPPGTSNAKKLFLVDLGLATRWRDSSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGFQGENKGFLVCKKKMATSPETLCCFCPQPFRQFAEYVVNLKFDEEPNYAKYISLFDGIVGPNPAIRPINTEGAQKLICQVGQKRGRVAMEEDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADVRLAQHIDKGNEDGLYISCVASCSNLWALIMDAGTGFTSQVYELSPYFLHKEWIMEQWEKNYYISAVAGANNGSSLVVMSKGTHYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSKWAIVMSRGAGFSDQVVELDFLYPSEGIHHRWDGGYRITSTAATWDQAAFILSVPRRKPSDETQETLRTSAFPSTHVKEKWAKNLYIASVCYGRTVS* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2830 699 SUPERFAMILY Protein kinase-like (PK-like) 132 414 IPR011009 -
Amo20g2830 699 MobiDBLite consensus disorder prediction 88 126 - -
Amo20g2830 699 MobiDBLite consensus disorder prediction 1 18 - -
Amo20g2830 699 Pfam Protein kinase domain 132 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2830 699 MobiDBLite consensus disorder prediction 88 110 - -
Amo20g2830 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Amo20g2830 699 Gene3D Transferase(Phosphotransferase) domain 1 102 457 - -
Amo20g2830 699 ProSiteProfiles Protein kinase domain profile. 132 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2830 699 MobiDBLite consensus disorder prediction 1 65 - -
Amo20g2830 699 CDD STKc_CK1 131 408 - -
Amo20g2830 699 ProSitePatterns Protein kinases ATP-binding region signature. 138 171 IPR017441 GO:0005524
Amo20g2830 699 PANTHER - 83 673 - -
Amo20g2830 699 SMART serkin_6 132 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2830 699 PANTHER CASEIN KINASE-RELATED 83 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2830 Amo-Chr20 127885164 127891772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2830 137 408 MAP Kinase Kinase Kinase AT5G50180 23.509 7.22e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Amo20g2830 Pkinase 9.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2830 - - gmx:100779382 1216.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4033 16 152550778 152558405 Amo20g2830 20 127885164 127891772 PCT
Amo20g2830 20 127885164 127891772 Amo16g4033 16 152550778 152558405 PCT