Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2824 ATGAGAATAGGGTCCATGGATGCTAATAATAACAACAGCAGTAAGCAACAAGGTCCTCCAAAAGGCGGTGAAATAAGCATGTGGGAGAAGCAAACAACAGAAGTGGTGGTTGCGATTCCAAGCGAGAGCCAAGATTCCAAAGGGGTTACTGAATCTTTGACACCAAAGCATAGCAGTAGAGTTGACTCCCCTCTCACAATGCACAACAACGACAACAATGATGCTGCTTCAGTGTATGGAACCTCAAAGTCACCACCTTTGAACTGTGCTTCCCCTGAAATAAGGTTCATGCCAAGCCCTAACAAGCCCCCAAGAATTCCCAATTCAAATGCAAACCTTGTCAGAAGGAAATCACTTTCAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAGCCTTATCCCATTGATGGTTCTGTTTTAGATGACAGTAATGTTAATGGCATTTCAACTTTGCAAGAACAGTTAGCTGGTAACTCACCGTATAGGACCTCATTCAAAGCATCATCGCCTAATAACAAACCTGGGACTGTTAATAGAACAGTTTCCATCACTTCCGTGACTCCCAAGACGCCTTTGATGGCGTCTCCCGGTCCTGCCGGGGAGGATGAGGATGAAATCATTTACAAGAAAGTTGAATTGAGTAAAGAGAAGCGTAAGAGAGTGACCACTATGGTTTTGATTGAATGCGTTGTGTTTGTGTGCCTTGCTGGTACCTTGATAGCTAGCTTGACAGTTGAAAAGCTCAGGGCGACGATGATTTGGGGGTTGGGGATTTGGAGATGGTGCGTTCTTGTGTTGGTGACATTTTGTGGCATGTTAGTTACAAGATGGTTTATGCACATTGTTGTTTTCTTGATTGAGATGAACTTTCTGTTGAGGAAAAAGGTGCTCTATTTTGTCCATGGACTGAAGAAATCTGTTCAGGTCTTCATTTGGCTCGGTTTAGTTCTTCTCACATGGGTGCTACTAATCAATCGTGGCGTGGCGCGATCTAAATTAGCCTCGAAAATCTTGGATGGAGTGACATGGACTCTTCTTTCCCTTCTAATTGGAGCATTCTTGTGGTTGATAAAGACATTGCTGCTGAAGATTTTGGCATCGAATTTCCATGTCAAGTCTTTCTTTGATCGGATTCAAGAATCGATATTCCATCAGTACATTTTGCAGACTCTGTCTGGGCCTCCGCTTATAGAAGAAGCTGAGAAGGTTGGGGGATCATTAAGTATTGGTCAATTTAGTTTCAAAAGTACAACAGGTAAAGGTGGCACAAAGAAAGAGGTTATTGATATGGCAAAGCTTCATAAGATGAAACAAGAGAAAGTTTCAGCCTGGACTATGAAGAATTTGATAGATGCTGTGACAAATTCAGGTCTGTCCACGATCTCTAATTCACTAGACGAAAGTTTCGACGATGGAGTGACTGAGCAAACTGATAAAGAGATTACAAATGAGATGGAAGCCACTGCTGCCGCCTATCTCATCTTCAGGAATGTTGCTGCCCCCGGTTGCACGTATATTGATGAGTATGAACTGAGGAGGTTTATGATCAAGGAAGAAGTTGATTTAGTATATCCTCAATTGGCACAAGCAGAGACAGGGCAAATTACTAGAAAGTCATTAGCAGATTGGGTGTTGAAGGTATATCAAGAACGAAAAGCATTGGCACATGCCTTAAGCGATACCAAAACAGCCGTAAGACAATTGAACAAACTTGTGACAGGGATCCTAGTGGTTGTGACCATAGTAATTTGGCTTCTACTGATGGAGATTGCAACAACAAAAGTACTTGTTTTCCTCTCTTCGCAGCTAGTACTTGCCGCTTTCATGTTTGGAAATACATGCAAGAACATTTTTGAAGCTATCATCTTCGTGTTTGTGATGCATCCATTTGATGTTGGTGACCGATGTGTTGTAGATGGTGTGGAGTTATTGGTTGAAGAAATGAACATACTGACAACAGTGTTCTTGAAGCTGAATAATGAAAAGGTGTACTATCCAAACTCAGTCCTTGCCATGAAACCAATTAGCAATTATTATAGAAGCCCGGATATGGGTGATGGAGTAGAATTTGCCATCGATTTTTCGACGCCAGCAGAGAAGATCGGTGCACTGAAAGAAAAGATAAAGAGGTACTTGGAGAGGAATCCACAATACTGGCATCCTAATCACGGGTTAGTAGTGAAGGAGATTGAGAATGTGAACAAGATTAAGATGGGTGTGTATGTGGTGCACACAATGAACTTTCAAGAGTTTGGGGAGAAGAACAAGCGAAGAACTGAACTAGTGATTGAATTGAAGAAGATATTAGAAGAGCTAGATATCAGATACAACCTTCTTCCACAAGCTGTTCATGTTAGCCATGTTGAATCAAATACAAGTCCACTCAAGAGATAA 2403 0.4174 MRIGSMDANNNNSSKQQGPPKGGEISMWEKQTTEVVVAIPSESQDSKGVTESLTPKHSSRVDSPLTMHNNDNNDAASVYGTSKSPPLNCASPEIRFMPSPNKPPRIPNSNANLVRRKSLSRSVYSKPKSRFGEQPYPIDGSVLDDSNVNGISTLQEQLAGNSPYRTSFKASSPNNKPGTVNRTVSITSVTPKTPLMASPGPAGEDEDEIIYKKVELSKEKRKRVTTMVLIECVVFVCLAGTLIASLTVEKLRATMIWGLGIWRWCVLVLVTFCGMLVTRWFMHIVVFLIEMNFLLRKKVLYFVHGLKKSVQVFIWLGLVLLTWVLLINRGVARSKLASKILDGVTWTLLSLLIGAFLWLIKTLLLKILASNFHVKSFFDRIQESIFHQYILQTLSGPPLIEEAEKVGGSLSIGQFSFKSTTGKGGTKKEVIDMAKLHKMKQEKVSAWTMKNLIDAVTNSGLSTISNSLDESFDDGVTEQTDKEITNEMEATAAAYLIFRNVAAPGCTYIDEYELRRFMIKEEVDLVYPQLAQAETGQITRKSLADWVLKVYQERKALAHALSDTKTAVRQLNKLVTGILVVVTIVIWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLAMKPISNYYRSPDMGDGVEFAIDFSTPAEKIGALKEKIKRYLERNPQYWHPNHGLVVKEIENVNKIKMGVYVVHTMNFQEFGEKNKRRTELVIELKKILEELDIRYNLLPQAVHVSHVESNTSPLKR* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2824 800 MobiDBLite consensus disorder prediction 119 138 - -
Amo20g2824 800 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 58 789 - -
Amo20g2824 800 MobiDBLite consensus disorder prediction 1 20 - -
Amo20g2824 800 Pfam Mechanosensitive ion channel 573 778 IPR006685 GO:0016020|GO:0055085
Amo20g2824 800 SUPERFAMILY Sm-like ribonucleoproteins 622 681 IPR010920 -
Amo20g2824 800 MobiDBLite consensus disorder prediction 36 86 - -
Amo20g2824 800 Gene3D - 632 681 IPR023408 -
Amo20g2824 800 MobiDBLite consensus disorder prediction 1 86 - -
Amo20g2824 800 PIRSF Memb_At2g17000 8 799 IPR016688 -
Amo20g2824 800 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 58 789 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2824 Amo-Chr20 127744336 127747578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2824 82 789 Mechanosensitive Ion Channel Family AT5G12080 61.376 0.0 871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2824 K22048 - gmx:100803107 1169.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2824 20 127744336 127747578 Amo20g2824 20 127744336 127747578 ECH