Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2786 ATGACCATGACGACTCAACTCCTCAAGCTCAATCTCTACCCGAAATCCAACATCTCCTTCAACCACGCACCAAATCGTCATGTTCAGTTCCTTCCCCTTCTTCCCACTAATCACCGTCGCAACGACATTCACCGCAACTGCCACCGCCCGGGATTCCTCCGGTCACATTTCCTCGTATCTAACTCGTCACGCACCGAGATTGCCTCGCCGGAGCCAGCTCAGCTAAAGACTACAGACTCCCCGCTCCTGCTCGACGTCTCCGGTATGATGTGCGGCGCCTGCGTCTCACGAGTCAAGAACATCCTCTCCGCCGATGACCGAGTTGACTCGGTCGTGGTCAACATGTTAACCGAGACCGCCGCCGTCAAGCTCAGGCGGCTCGACGAGGAGAAAGATGTGGAGGAGCCGGCGACGGTTGCGGAGAGCCTGGCCCGGAGGCTGACCGAGTGCGGTTTTCCGACGAAACGAAGGGCGTCGAGTTTGGGAGTTGCAGAGAACGTCAGGAAGTGGAAGGAGCTTGTGAAGAAGAAGGAGGAACTCGTCGCCAAAAGCCGCAGCCGTGTCGCTTTTGCTTGGGCTTTGGTGGCGCTGTGCTGTGGATCTCACGCTTCGCACGTTCTTCATTCTTTGGGGATTCACATTGGTCATGGATCGGTTTTGGAAATTCTTCACAATTCATATGTGAAAGGTGGTATAGCTCTGGGGTCTCTCTTGGGACCAGGACGAGAGTTACTCTTTGATGGCCTAAACGCATTTAGGAAGGGATCACCAAACATGAACTCTCTTGTGGGATTTGGTTCTATAGCTGCTTTTATCATCAGTTCGATATCACTACTGAACCCCGGGTTGGCCTGGGATGCAACATTCTTTGATGAGCCGGTCATGCTTCTTGGTTTTGTGCTTCTTGGACGTTCTTTGGAGGAAAAGGCAAGGATTCAGGCATCTAGTGATATGAATGAACTCCTTTCATTGATATCTACTCAGTCAAGACTTGTGGTTACTTCATCGGAAGGTTCACCATCTACAGAGAGTGTGCTCGGTTCTAACACAATTTGCGTTGAAGTCCCAACTGATGATATCCGAGTAGGTGACTCAGTGTTGGTGTTGCCTGGAGAGACTATTCCTATAGATGGAAAGGTCATTTCAGGAAGAAGTGTTGTGGATGAATCCATGCTTACTGGAGAATCACTTCCTGTATTTAAGGAGGAAGGCCTCACAGTTTCTGCAGGAACTATAAATTGGGATGGACCTTTAAGGATTGAAGCTTCTTCATCTGGCTCCAACACAATGATATCCAAGATTGTACGCATGGTTGAGGATGCCCAGTCACGTGAAGCACCTGTACAGAGGCTTGCTGATTCCATAGCAGGGCCATTTGTATACAGCGTAATGACTATGTCAGCAGCAACATTTGCATTTTGGTACTATATTGGATCAAACATATTTCCTGATGTTTTGCTCAATGATATTGCGGGCCCAGAAGGGGATCCTTTGCTTTTGAGTTTAAAGCTTGCTGTAGATGTTTTGGTTGTCTCTTGCCCTTGTGCACTGGGTCTTGCCACACCTACAGCGATCTTGGTTGGCACCTCCCTTGGGGCAAGAAAAGGACTTCTTATTAGAGGGGGAGATGTGCTAGAACGCTTGGCCAGTATAAATTATATTGCCCTTGACAAGACCGGAACCCTCACCAAAGGAAAACCAGTTGTCTCCTCGGTGAGCTCTATTAATTATGGAGAATCAGAAATACTTCAGATTGCTGCTGCGGTGGAGAAAACAGCATCTCATCCAATTGCAAAGGCTATTATCAATAAAGCTGAGTCATTAGAGCTGGTCCTTCCAGTTACACAAGGGCAATTGGTAGAACCAGGCTTTGGAACATTGGCAGAAATAGATGGGCGTTTAGTTGCAGTTGGATCTTTAGAATGGGTCCATGATCGCTTCCAGATTAAAATGAACCCCTCTGATTTAGTGAATCTCGAACATACTTTGATGAATCATTCATCAGAGACATCTTCAAACTATTCAAAAACTGTTGTCTATGTTGGACGTGAGGAAGAAGGCATCATTGGTTCTATTACCATATCTGACGTTGTACGTGAAGATGCTCAATCTACCGTAGCAAGACTCAAGCAGAAGGGGATTGAAATGGTCCTGTTATCAGGAGACAGGGAAGAGGCAGTTGCAACTATAGCACAGACAGTTGGGATTGGAAGCGATTTTATGAAAGCATCATTGTCCCCACAGCAGAAATCTAAGTTTATTTCATCTTTGAAAGCTTCTGGACATCATGTTGCAATGGTTGGTGATGGGATAAATGATGCACCCTCTTTGGCTGTAGCTGATGTTGGGATTGCTCTACAAAATGAAGCTCAAGAGAACGCTGCCTCTGATGCTGCATCCATTATACTTCTTGGAAACAAAATTTCTCATGTTGTTGATGCACTAGACCTTGCACAGGCAACCATGGGAAAAGTGTACCAAAATTTATCTTGGGCGGTAGCCTACAACGTTGTTGCCATTCCCATTGCTGCTGGAGTTTTACTTCCCCAATTTGAATTTGCTATGACACCTTCACTATCAGGAGGGTTGATGGCTTTGAGCTCCATCTTCGTGGTTGGCAACTCGTTGCTTCTACAACTTCATGGGTCTCAGACCTCCAAAAAGGCCACATAA 2673 0.4691 MTMTTQLLKLNLYPKSNISFNHAPNRHVQFLPLLPTNHRRNDIHRNCHRPGFLRSHFLVSNSSRTEIASPEPAQLKTTDSPLLLDVSGMMCGACVSRVKNILSADDRVDSVVVNMLTETAAVKLRRLDEEKDVEEPATVAESLARRLTECGFPTKRRASSLGVAENVRKWKELVKKKEELVAKSRSRVAFAWALVALCCGSHASHVLHSLGIHIGHGSVLEILHNSYVKGGIALGSLLGPGRELLFDGLNAFRKGSPNMNSLVGFGSIAAFIISSISLLNPGLAWDATFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVVTSSEGSPSTESVLGSNTICVEVPTDDIRVGDSVLVLPGETIPIDGKVISGRSVVDESMLTGESLPVFKEEGLTVSAGTINWDGPLRIEASSSGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVYSVMTMSAATFAFWYYIGSNIFPDVLLNDIAGPEGDPLLLSLKLAVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLASINYIALDKTGTLTKGKPVVSSVSSINYGESEILQIAAAVEKTASHPIAKAIINKAESLELVLPVTQGQLVEPGFGTLAEIDGRLVAVGSLEWVHDRFQIKMNPSDLVNLEHTLMNHSSETSSNYSKTVVYVGREEEGIIGSITISDVVREDAQSTVARLKQKGIEMVLLSGDREEAVATIAQTVGIGSDFMKASLSPQQKSKFISSLKASGHHVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILLGNKISHVVDALDLAQATMGKVYQNLSWAVAYNVVAIPIAAGVLLPQFEFAMTPSLSGGLMALSSIFVVGNSLLLQLHGSQTSKKAT* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2786 890 SUPERFAMILY Calcium ATPase, transmembrane domain M 291 549 IPR023298 -
Amo20g2786 890 CDD HMA 84 153 IPR006121 GO:0046872
Amo20g2786 890 SFLD C1.7: P-type atpase like 538 820 - -
Amo20g2786 890 CDD P-type_ATPase_HM 187 877 - -
Amo20g2786 890 ProSiteProfiles Heavy-metal-associated domain profile. 81 156 IPR006121 GO:0046872
Amo20g2786 890 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 259 878 IPR027256 GO:0006812|GO:0016021|GO:0019829
Amo20g2786 890 ProSitePatterns E1-E2 ATPases phosphorylation site. 557 563 IPR018303 -
Amo20g2786 890 Pfam haloacid dehalogenase-like hydrolase 551 781 - -
Amo20g2786 890 Gene3D - 566 698 IPR023299 GO:0000166
Amo20g2786 890 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 349 859 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo20g2786 890 SFLD p-type atpase 538 820 IPR044492 -
Amo20g2786 890 PRINTS P-type cation-transporting ATPase superfamily signature 388 402 - -
Amo20g2786 890 PRINTS P-type cation-transporting ATPase superfamily signature 690 701 - -
Amo20g2786 890 PRINTS P-type cation-transporting ATPase superfamily signature 712 722 - -
Amo20g2786 890 PRINTS P-type cation-transporting ATPase superfamily signature 555 569 - -
Amo20g2786 890 PRINTS P-type cation-transporting ATPase superfamily signature 767 786 - -
Amo20g2786 890 SUPERFAMILY Calcium ATPase, transduction domain A 349 438 IPR008250 -
Amo20g2786 890 Pfam E1-E2 ATPase 340 535 - -
Amo20g2786 890 PANTHER ATP7, ISOFORM B 79 880 - -
Amo20g2786 890 SUPERFAMILY HMA, heavy metal-associated domain 83 124 IPR036163 GO:0046872
Amo20g2786 890 SUPERFAMILY HAD-like 553 875 IPR036412 -
Amo20g2786 890 Gene3D - 75 158 - -
Amo20g2786 890 Pfam Heavy-metal-associated domain 84 152 IPR006121 GO:0046872
Amo20g2786 890 Gene3D - 311 442 - -
Amo20g2786 890 Gene3D - 546 818 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2786 Amo-Chr20 126957783 126968338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2786 250 879 Primary Pumps ATPases AT1G63440 37.129 1.00e-115 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2786 K17686 - gmx:100127402 1414.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2786 20 126957783 126968338 Amo20g2786 20 126957783 126968338 ECH