Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2779 ATGACTAAGATTACATGGAAATCAATCATCCCAAGTTGTTACAAGATTACCAAAAGCAAAGTAGAAGAAGAAGAGGTTTCAAAACATTGTTCTTTCCAAAGGCTATGCCTCTCTGATGTAAGCATTACAAGCTCTCCTAAGGACATTGAAGATCTTTCAACTTCTTTTGTTGGATCAAAGCTTTACACATTCACCTTAGAGGAGCTAAAAGAAGCAACGCATAATTTCTCATGGAGTAACATGCTTGGTGAAGGTGGGTTTGGACCTGTTTACAAAGGTTTTGTTGATGACAACCTTAAACGTGGTCTGAAGGCTCAATCCGTGGCAGTTAAACGGTTAGACTTGGAAGGCTTGCAAGGTCACAGAGAGTGGCTGGCAGAGATTATATTTCTTGGGCAGCTAAGGCATTCACATCTTGTTAAGTTAATTGGATACTGTTGTGAAGAAAAGAACAGGCTTTTGGTGTATGAATACATGCCAAGAGGTAGCTTAGAGAACCAATTATTCAGAAGGTATTCTTCTAGCATGCCATGGTCAACAAGGATGAAAATTGCATTAGGTGCTGCTAAGGGCCTTGCATTCCTTCATGAAGCAGATAAACCTGTCATATACAGAGATTTCAAAACTTCAAATATCTTACTTGACTCAGACTACACAGCTAAATTATCAGACTTTGGGTTAGCTAAGGATGGTCCTGAAGGAGAAGAAACACATGTAACAACAACACGCATAATGGGGACAAAGGGCTATGCTGCCCCTGAATATGTCATGGCAGGTCACCTTTCTACCAAGAGCGATGTGTATAGCTATGGAGTGGTTCTGTTGGAGCTTCTTACAGGGAAGCGAGTGGTGGATAGGAGCCGGCCGAGTCGAGAGCGGAGCCTGGTGGAATGGGCAAGGCCTATGTTGAGGGATCAAAGGAAGCTGCACCATGTGATGGACCCAAGGTTGGAAGGGCAGTTTCCTATGAAAGGAGCAGTTAAGGTTGCTGCATTGACACATAAATGCTTGAGTCACAACCCCAATCCAAGACCCTCAATGAGGGATGTTGTCAAGACATTGGAGTCACTTCAAGACTTTGATGATGTCTTCATAGCACCATTTGTTTATGTTGCAGTTAGTGAAAAGAAATAG 1134 0.425 MTKITWKSIIPSCYKITKSKVEEEEVSKHCSFQRLCLSDVSITSSPKDIEDLSTSFVGSKLYTFTLEELKEATHNFSWSNMLGEGGFGPVYKGFVDDNLKRGLKAQSVAVKRLDLEGLQGHREWLAEIIFLGQLRHSHLVKLIGYCCEEKNRLLVYEYMPRGSLENQLFRRYSSSMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKTSNILLDSDYTAKLSDFGLAKDGPEGEETHVTTTRIMGTKGYAAPEYVMAGHLSTKSDVYSYGVVLLELLTGKRVVDRSRPSRERSLVEWARPMLRDQRKLHHVMDPRLEGQFPMKGAVKVAALTHKCLSHNPNPRPSMRDVVKTLESLQDFDDVFIAPFVYVAVSEKK* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2779 377 Pfam Protein tyrosine and serine/threonine kinase 78 354 IPR001245 GO:0004672|GO:0006468
Amo20g2779 377 PANTHER OS01G0588500 PROTEIN-RELATED 18 376 - -
Amo20g2779 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Amo20g2779 377 Gene3D Transferase(Phosphotransferase) domain 1 159 365 - -
Amo20g2779 377 CDD STKc_IRAK 82 357 - -
Amo20g2779 377 Gene3D Phosphorylase Kinase; domain 1 38 158 - -
Amo20g2779 377 PANTHER KINASE 1B 18 376 - -
Amo20g2779 377 SUPERFAMILY Protein kinase-like (PK-like) 52 356 IPR011009 -
Amo20g2779 377 ProSiteProfiles Protein kinase domain profile. 76 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2779 Amo-Chr20 126603128 126605271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2779 63 354 Glycoside Hydrolase AT3G07070 52.881 3.46e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo20g2779 PK_Tyr_Ser-Thr 3.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2779 - - gmx:100805771 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2779 20 126603128 126605271 Amo20g2779 20 126603128 126605271 ECH
Amo19g1126 19 21088825 21092023 Amo20g2779 20 126603128 126605271 ECH
Amo10g2329 10 81352696 81354861 Amo20g2779 20 126603128 126605271 hybridization