Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2777 ATGGAGACGCAGCGGATAATGGAGATTCCGCATAGGAGCATAGACAAGAGGCCAAGGAAGAGACCTCGTTTAACATGGGACATGCCTCCTCCTCCGCCTCCTATTCCTCCTCCTCTTCCTTGCAAGGTTCTTCCAGCTTCAAATCGCAGCCAGGAGGTTGGGAATGGCATTGTTCCAAATCATGTTTATTCATCATCCATGTTTTATAGGGGAACGTCTCGMAATGGATCGCCCCCTTGGAGGCCTGATGATAAAGATGGTCACTATGTTTTTGCCGTGGGTGAAAATTTGACACCACGATACAGGATTCTTGGTAAAATGGGTGAAGGAACATTTGGTCAAGTCTTGGAATGTCTTGACAATGAAAAGAAAGAAGTTGTGGCAATTAAAATTGTTCGCTCCCTAATCAAGTATCGTGAGGCTGCAATGACTGAAATTGATGTGCTGATGAGGCTAGCCAAACATGATGTTTCTGGTTCTCGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGCAAAAACAGCTATCGTTCTTTTCCCATTGATCTAGTTCGGGAGTTTGCCAGACAACTTTTGGAGTCTGTAGCATTTATGCATGATTTATGCTTGATTCACACTGATTTGAAGCCAGAGAATATTCTGCTTGTCTCATCAGAATTTATCAAAGTGCCAGATTATAAGACCACAAAAGATGGCTCCTATTTCAAGAATCTTCCCAAGACAAGTTCCATTAAACTCATTGATTTTGGGAGTACAACATTTGAGCATCAAGATCATAGTTATGTAGTGTCAACAAGACATTATCGTGCACCAGAAGTTATCTTAGGTCTTGGATGGAATTATCCTTGTGACCTTTGGAGTGTAGGCTGCATATTAGTTGAACTTTGCACAGGTGAGGCACTTTTCCAGACGCATGAGAACTTGGAACATCTTGCCATGATGGAGCGAGTTTTAGGGCCACTGCCTCCCCAAATGGTGGTCAGGGCAGATCGTCGAGCCGAGAAGTATTTTAGAAGGGGTGCACGTTTGGGTTGGCCTGATAGTTCAACTTCAAGAGAAAGCATGAGGGCAGTTTGGAAATTGCCTCGATTACCGAACCTTATAATGCAGCACGTTGATCATTCTGCCGGTGACTTGATTGACCTCTTGCAAGGGCTTTTACGGTATGAACCAGTAGAGCGGCTTAGAGCAAGGGAAGCGTTAAGACATCCCTTCTTTTTGCCAGGAGATCCTAAAAGATATGGTTACTCATTATAA 1314 0.4307 METQRIMEIPHRSIDKRPRKRPRLTWDMPPPPPPIPPPLPCKVLPASNRSQEVGNGIVPNHVYSSSMFYRGTSRNGSPPWRPDDKDGHYVFAVGENLTPRYRILGKMGEGTFGQVLECLDNEKKEVVAIKIVRSLIKYREAAMTEIDVLMRLAKHDVSGSRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREFARQLLESVAFMHDLCLIHTDLKPENILLVSSEFIKVPDYKTTKDGSYFKNLPKTSSIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPPQMVVRADRRAEKYFRRGARLGWPDSSTSRESMRAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYEPVERLRAREALRHPFFLPGDPKRYGYSL* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2777 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Amo20g2777 437 CDD PKc_CLK 88 425 - -
Amo20g2777 437 MobiDBLite consensus disorder prediction 1 35 - -
Amo20g2777 437 Pfam Protein kinase domain 101 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2777 437 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 425 - -
Amo20g2777 437 SMART serkin_6 101 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2777 437 Gene3D Phosphorylase Kinase; domain 1 88 181 - -
Amo20g2777 437 PANTHER BNAA07G37640D PROTEIN 1 425 - -
Amo20g2777 437 ProSiteProfiles Protein kinase domain profile. 101 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2777 437 SUPERFAMILY Protein kinase-like (PK-like) 88 429 IPR011009 -
Amo20g2777 437 MobiDBLite consensus disorder prediction 1 24 - -
Amo20g2777 437 Gene3D Transferase(Phosphotransferase) domain 1 155 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2777 Amo-Chr20 126508048 126512693 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2777 101 425 Core Cell Cycle Gene Families AT1G76540 27.515 7.61e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Amo20g2777 Pkinase 8.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2777 K08287 - gmx:100808061 769.229