Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2761 ATGGATTCATCAAACCAGAACCAACCTTGTCCCAACCGAACTTTTAATCACTTATACACAGAACCTTGTGCTGAGGAATCAGAATCAGGTTCACTCCCTTCCGAGACACCCCAGACCATGGACCCTAGAGGGTATCAATTAGAAGTATTTGAAGTTGCAAAGAAGAGGAACACAATAGCAGTATTGGATACAGGTGCTGGTAAGACCTTAATAGCTGTGTTGCTTATGAAGAACATTGGTCAAGCTATCAGGTCCAGTGGCTCGAAAAAGTTGATTATTTTCTTAGCTCCAACCGTTCATCTTGTCAACCAGCAATATAAGAATATAAYAGATCTTACAGATTTTCAAGTTCAGGAGTATTATGGGGCAAAAGGAGTGGACGCATGGGATTTAAGTATCTGGGAGAAGGAAATTAGTGAAAATGAGGTACTGGTTATGACACCCCAGCTTCTTTTGGACGCTCTAAGAAAGGCTTTCTTGAAGATGGAATCAATATGCTTGATGATTATTGATGAGTGTCATCGAGCAACTGGTAACCATCCCTATGCAAAAGTAATGAAGGAATTCTATCACAAGGCTGATGAAAAGCCTAAAATTTTTGGAATGACAGCATCACCAGTAGGTAAAAAAGGTGTTTCCTCTTCTGTGGATTGTGAGGGTCAGATATCAGAACTGGAAAGTATCTTGGATTCTCGGAGATATACTGTAGAAGATAGGACCGAGATGGAGGTATATATACCTTCTGCAAAAGAAAGTTGTAGATATTATGACCAGGCACAATTCCCTGATTTGAATTTGAAGCCAAAGATTGAAGACTTGTGGTCCAAGTCTGGTGCATTGTTATCGGAATTACAAAGCTCAACTGATGGTAACTCTAAGGATGTGGAGAATAAATTAAATACGCTGCATAAGCGGATGTCCAATGAACTTGCAAGAGTCTTGTATTGCCTTGAAGATCTTGGCCTCCTATGTGCTTATGAGGCTGTTAAAATATGGCATGAAAATTTCTCCAAAGTCGAAGGAGAGTGTGAAGTTTACCGAAAAGGTTTTAGTCAGTGCAAAGCATTCATTGACGTAGTCATGCAAATAGTTGAAGAATCCCTCCATCTTGATGATAACAAGATTCCAGSGCTTGATRTTYATTTTTCAAAGGCAGTAGACCTGGGATACTTATCTCCCAAATTACTTGAACTTATTAAACTCTTCCAGTCATTTGGACATTCATGTGAGGTATTGTGCCTTGTTTTTGTCGAAAGAATCATCACAGCAAAGGTGATTGAAAGATTTATAAAGAAAGTTCCACAGATATCTCATTTTACAGTTTCCTATTTAACCGGAAACAATACGTCAGCTGGTTCACTGACTGCTAAGAAGCAGAAGGAAACATTGGATTCTTTTCGTTCTGGAAAGGTCAATATATTATTTACAACRGAGGTKATTGAGGAAGGAATTCATGTGCCAAAGTGCTCATGTGTGATACGTTTTGACCTACCGAACACATGTCGCAGTTATGTCCAGTCTCGGGGAAGATCTAGGCAGGATGACTCCCAATTTATTGTGATGTTGGAGAGGGGAAACYTGGATCAAAGAAATAAACTGTTTWACATCATCAGGAGTGAGCGATCCGTGACTGAAGCGGCTATATATAAAGAAWATCATGCTTCTAATTTAAGGGTGATTACGGAAGTYAAATCAAATATATATTATGTTGAGTCTACTGGAGCATCAGTCAACTTGGACTCAAGTGTTAGTCTTTTAAATCGATATTGTGAAAAGCTCCCATGTGATGAGTACCCCCGTGCAAAGCCCAATTTTGAATTCCTGCCTTTTGAAGGGGCATACAGGTGTAAATTAACATTACCACCTAATGCAGCTTTCCAAACAATAGTCGGTCCCTTGGGTAAAGATGTCCGTTTGGCAAGGAATCTTGTCTGTTTAGAAGCTTGTAAGAAGCTGCATCAGATGCATGCCTTGAATGATCATCTTGTCCCTTTCACTGAAAAGCCTCCAGAAGCTGAACATAGTGTGCAAAACCAAGAATCTGGTACAGGATCAGGTGCAGGAACCACAAGAAGAAAAGAATTACATGGCACAGCCAGCATTCGAGCTTTATGTGGTACAATTGAAGACAAACTAGACGGAGCCAAATTTTATGCCTATAGATTTGATTTCAAATGCAGCATTGTCGGTGAAATCTTCTCAGGATTTGTTCTCCTGATTGAGTCAAAGTTTGACGATGATGTTGGAAATATTGAATTAGATCTTTATTTGATAAAAAAAACCGTAAAGGCTTCCTTATCTTTCTGTGGACAAGTTTATTTGAATGCTGAACAGATGATGTATGCAAAATGCTTCCATGAGGTTTTTTTCAATGGTTTGTTTGGGAGATTGGTTCATAAGTCCAAATCAGTAAAAGGAGAGAGGGAATTCTTGCTTCAGAAAGACACAAAATCACTGTGGAGTCCACACTTCTATTTGCTTCTACCACTACAAAAAGGGGATGATGAATCTAAAGGATCTTTGGAAATAAATTGGTCTGGAATAAGTTCTTGTGRTCCTGCAGTTGAATTTTTAAGGAACAAGTTTTCAWTGGTTGCTGGAGATTATGATGGGGGCAGTAAAATTGRGTCACCTTGTGATGCTAATTCATCAAAGGTGGCCTGTGAAGGCACAGATAAAATTCACTTTGCCAATTGTGTAGTTGATGCTAACAGTATAAAGAATCGGGTAGTTTTGGCTATTCACACTGGAAGAATYTATTGTATTCTTGAAGCAGATAACAAGCTATGCGCTGAAAGTCCGTTTGATGGAAACGATGAGAAGTCTCCAGAGAACCACATGACCTTCGCAGAATACTTCAAGAAAAGGTGCCTGATTTGCTTTACCYTACACCCCATATTTTCTCTTTCWCTTGCTTTTATTGCMTTGCCATTCATAGATTATTCATGTAGTTACCTAAACATCTTGATCATMGTCAGCTATGGGATTGCTATGAAACATCCAGGACAACCTTTATTACGTTTGAAGCAAAGTCATAATGCACACAATGTTCTTTTGAATTTCTATGAGGAAGATGAGAAGGATAAGTCATRGCAAATTGGCCCAGCAAACACCAAAATGCCTGCGCATGTTCACATTCCACCTGAGCTTTTATTTATTCTTGATGTTAAAAGACATGTTTTAAAGTCAATGTACTTGCTACCATCATTGATGCATCGTCTTGAATCTCTCACGTTGTCCAGTCAGCTTAGACGAGAGATAGATGGTCAGAGTAGCAATSTCAGCATARCTAGCTCTCTGATTCTAGAAGCACTGACAACCTTAAGATGCTGTGAAAATTTTTCAATGGAACGTCTTGAGTTGCTYGGAGATTCTGTTCTTAAGTTTGTAGTGAGCTGTCATCTCTTTCTTAAATATCCTAAGGAACATGAAGGYAAATTATCTGATAGACGGAAGTGGGCTGTTTGTAATTCAACTCTGCATAAACTGGGAATAAATCGCAAATTACAGGGCTATATCCAAGATTCTGCATTTGAACCACGCCGTTGGGTTGCTCCAGGACAGCGTTCTATACATGTTGTTTCTTGTGAATGTGGGGTGGAAACCCCAGAAGTTCCTGTGGATGGAAAATTCCAGACTGAAGATCCAAAAGTTGTGGTCGGAAAGCTTTGTGACCAGGGTCACCGCTGGATGTGTTCAAAGACAATTTCTGATTGTGTTGAAGCTCTTATAGGAGCATACTATGTAGTTGGCGGATTGATTGCTGCACTACATGTCATGAAGTGGCTTGYCATTGATTCTGAGCTAGAACRGTCCTTGGTTGAGGAAGCCATTGCTGCTGCATCTCTCCATACATATGCACCAAAACAAGACGAGATTGCAACCCTTGAAATGAAAATTGGGTATAAATTTTCTGTTAAGGGACTCTTACTGGAGGCAATGACACATGTATCTGAGGCTGAACTTGGGATTGGTTGCTGCTACGAGAGGCTTGAATTTCTCGGCGACTCTGTATTGGATCTTCTTATTACATGGCATCTTTATCAGAGCCATAAAGATATTGATCCAGGAGAGCTGACTGACTTGCGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCCGTTAGACGAAACCTTTACCCACACCTTCTGCTCAGCTCTGGAGATTTGGTGAGCCAGATATCAGAATATGTTAAGGTCATTTCTGAATCAGAGAGCAGTACCAGATCACTCCCAGGCATTAAAGCCCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTATACTAGTTGATACCAAGCTCAATCTTGATGAAGTGTGGAGAATTTTCAATCCTCTGTTGTCTCCCATTGTTACCCCTGATAAACTTGAATTGCCTCCGTTGCGTGAACTAATTGAATTATGTGGCTCTCTTGGATATTTTATCAAAGAAAATTGTAAAAGGAAGGGAACTACTGTGCATGCTGAGCTTAGTGTACAACTGGAAAACACACTCTTAGTTCGGAAGGGAAACGGAATGACTAAAAAAATAGCAAAAGGAGAAGCTGCATTTCACTTGTTGAAAGATCTCAAGAAGAAGGGAATTTCACATGGCAGTAGCGTGCCAAAGAGAAAAAGAGAGAATCCTGACTATCTATGCGATTCGTCTAATCCAGAAACCAATATTGGTATTTGCACTGCTCTAACAGATGGACATTCGTCAAAGACAGTAGCGAATAAGAGGGCGAAAGTGGATGAAACTAACACAGAAGAAATTGCATCTGCTGTTTCTTTGCCCCACAAAGACTCATCTCCTGAGGACTCTGATTCCATTCCAGTTATTGCATCTATCAATATGAAGAAAGGAGGACCCCGAACCACACTATATGAACTGTGCAAGAGATTACAGTGGCCATTGCCAGAATATGATTCAACAGAGTATAAAGATAGATCCCTGTTTGAATCCAGCGAAGGCCTGGAAGGAACAAAGGGAGTCAACTGCTTTGTGTCAAAAATAACCTTGTGCATACCGAATGATGGTAATATAGAATGCACAGGAGAAGCTAGAGCTGATAAGAAGAGTTCATATGACTCTGCTGCAGTTAAAATACTTCATGAGCTGCAACGACTGGGGAAGCTTAAGATTGATGATGCTTAG 5151 0.399 MDSSNQNQPCPNRTFNHLYTEPCAEESESGSLPSETPQTMDPRGYQLEVFEVAKKRNTIAVLDTGAGKTLIAVLLMKNIGQAIRSSGSKKLIIFLAPTVHLVNQQYKNIXDLTDFQVQEYYGAKGVDAWDLSIWEKEISENEVLVMTPQLLLDALRKAFLKMESICLMIIDECHRATGNHPYAKVMKEFYHKADEKPKIFGMTASPVGKKGVSSSVDCEGQISELESILDSRRYTVEDRTEMEVYIPSAKESCRYYDQAQFPDLNLKPKIEDLWSKSGALLSELQSSTDGNSKDVENKLNTLHKRMSNELARVLYCLEDLGLLCAYEAVKIWHENFSKVEGECEVYRKGFSQCKAFIDVVMQIVEESLHLDDNKIPXLDXXFSKAVDLGYLSPKLLELIKLFQSFGHSCEVLCLVFVERIITAKVIERFIKKVPQISHFTVSYLTGNNTSAGSLTAKKQKETLDSFRSGKVNILFTTEVIEEGIHVPKCSCVIRFDLPNTCRSYVQSRGRSRQDDSQFIVMLERGNLDQRNKLFXIIRSERSVTEAAIYKEXHASNLRVITEVKSNIYYVESTGASVNLDSSVSLLNRYCEKLPCDEYPRAKPNFEFLPFEGAYRCKLTLPPNAAFQTIVGPLGKDVRLARNLVCLEACKKLHQMHALNDHLVPFTEKPPEAEHSVQNQESGTGSGAGTTRRKELHGTASIRALCGTIEDKLDGAKFYAYRFDFKCSIVGEIFSGFVLLIESKFDDDVGNIELDLYLIKKTVKASLSFCGQVYLNAEQMMYAKCFHEVFFNGLFGRLVHKSKSVKGEREFLLQKDTKSLWSPHFYLLLPLQKGDDESKGSLEINWSGISSCXPAVEFLRNKFSXVAGDYDGGSKIXSPCDANSSKVACEGTDKIHFANCVVDANSIKNRVVLAIHTGRIYCILEADNKLCAESPFDGNDEKSPENHMTFAEYFKKRCLICFTLHPIFSLSLAFIALPFIDYSCSYLNILIIVSYGIAMKHPGQPLLRLKQSHNAHNVLLNFYEEDEKDKSXQIGPANTKMPAHVHIPPELLFILDVKRHVLKSMYLLPSLMHRLESLTLSSQLRREIDGQSSNXSIXSSLILEALTTLRCCENFSMERLELLGDSVLKFVVSCHLFLKYPKEHEGKLSDRRKWAVCNSTLHKLGINRKLQGYIQDSAFEPRRWVAPGQRSIHVVSCECGVETPEVPVDGKFQTEDPKVVVGKLCDQGHRWMCSKTISDCVEALIGAYYVVGGLIAALHVMKWLXIDSELEXSLVEEAIAAASLHTYAPKQDEIATLEMKIGYKFSVKGLLLEAMTHVSEAELGIGCCYERLEFLGDSVLDLLITWHLYQSHKDIDPGELTDLRSASVNNDNFAQVAVRRNLYPHLLLSSGDLVSQISEYVKVISESESSTRSLPGIKAPKALGDLVESIAGAILVDTKLNLDEVWRIFNPLLSPIVTPDKLELPPLRELIELCGSLGYFIKENCKRKGTTVHAELSVQLENTLLVRKGNGMTKKIAKGEAAFHLLKDLKKKGISHGSSVPKRKRENPDYLCDSSNPETNIGICTALTDGHSSKTVANKRAKVDETNTEEIASAVSLPHKDSSPEDSDSIPVIASINMKKGGPRTTLYELCKRLQWPLPEYDSTEYKDRSLFESSEGLEGTKGVNCFVSKITLCIPNDGNIECTGEARADKKSSYDSAAVKILHELQRLGKLKIDDA* 1717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2761 1716 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 552 IPR001650 -
Amo20g2761 1716 ProSitePatterns Ribonuclease III family signature. 1329 1337 IPR000999 GO:0004525|GO:0006396
Amo20g2761 1716 Gene3D - 36 274 IPR027417 -
Amo20g2761 1716 ProSiteProfiles Ribonuclease III family domain profile. 1293 1438 IPR000999 GO:0004525|GO:0006396
Amo20g2761 1716 Pfam Type III restriction enzyme, res subunit 53 206 IPR006935 GO:0003677|GO:0005524|GO:0016787
Amo20g2761 1716 Pfam Ribonuclease III domain 1117 1251 IPR000999 GO:0004525|GO:0006396
Amo20g2761 1716 Pfam Ribonuclease III domain 1329 1437 IPR000999 GO:0004525|GO:0006396
Amo20g2761 1716 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 582 672 IPR005034 GO:0016891
Amo20g2761 1716 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 206 IPR014001 -
Amo20g2761 1716 ProSiteProfiles Ribonuclease III family domain profile. 1080 1252 IPR000999 GO:0004525|GO:0006396
Amo20g2761 1716 SMART helicmild6 424 514 IPR001650 -
Amo20g2761 1716 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 994 1710 - -
Amo20g2761 1716 SUPERFAMILY PAZ domain 904 1062 IPR036085 GO:0005515
Amo20g2761 1716 SMART riboneu5 1308 1461 IPR000999 GO:0004525|GO:0006396
Amo20g2761 1716 SMART riboneu5 1099 1272 IPR000999 GO:0004525|GO:0006396
Amo20g2761 1716 Gene3D - 1628 1707 - -
Amo20g2761 1716 SMART ultradead3 38 237 IPR014001 -
Amo20g2761 1716 MobiDBLite consensus disorder prediction 1 41 - -
Amo20g2761 1716 PANTHER DICER-RELATED 25 961 - -
Amo20g2761 1716 MobiDBLite consensus disorder prediction 668 691 - -
Amo20g2761 1716 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 25 961 - -
Amo20g2761 1716 SUPERFAMILY RNase III domain-like 1292 1458 IPR036389 GO:0004525|GO:0006396
Amo20g2761 1716 Gene3D Ribonuclease III domain 1289 1460 IPR036389 GO:0004525|GO:0006396
Amo20g2761 1716 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1495 1530 IPR014720 -
Amo20g2761 1716 MobiDBLite consensus disorder prediction 1 15 - -
Amo20g2761 1716 CDD SF2_C_dicer 390 522 - -
Amo20g2761 1716 Gene3D - 388 547 IPR027417 -
Amo20g2761 1716 SUPERFAMILY RNase III domain-like 1098 1268 IPR036389 GO:0004525|GO:0006396
Amo20g2761 1716 Gene3D Dicer dimerisation domain 577 674 IPR038248 -
Amo20g2761 1716 MobiDBLite consensus disorder prediction 27 41 - -
Amo20g2761 1716 Pfam Dicer dimerisation domain 582 668 - -
Amo20g2761 1716 Gene3D Ribonuclease III domain 1081 1265 IPR036389 GO:0004525|GO:0006396
Amo20g2761 1716 ProSiteProfiles PAZ domain profile. 906 956 IPR003100 GO:0005515
Amo20g2761 1716 CDD DEXHc_dicer 42 238 - -
Amo20g2761 1716 Pfam Helicase conserved C-terminal domain 413 511 IPR001650 -
Amo20g2761 1716 PANTHER DICER-RELATED 994 1710 - -
Amo20g2761 1716 Gene3D paz domain 892 1062 - -
Amo20g2761 1716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 529 IPR027417 -
Amo20g2761 1716 CDD RIBOc 1309 1459 IPR000999 GO:0004525|GO:0006396
Amo20g2761 1716 CDD RIBOc 1103 1263 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2761 Amo-Chr20 126221385 126232886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2761 438 511 Eukaryotic Initiation Factors Gene Family AT3G19760 37.838 4.01e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2761 K11592 - gmx:100806831 2299.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2761 20 126221385 126232886 Amo20g2761 20 126221385 126232886 ECH
Amo10g2314 10 81008451 81018987 Amo20g2761 20 126221385 126232886 hybridization