Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2760 ATGGAGGCAACAGAAAGATTAGGTGGCCAGTATAGCCCCAATTTGCATCCACAGTGTACCCATTTGGTGTACAGTTTTGGAGGACGCAAGTTTGAGCATGCGCTAAAGCATGGAGCAAAAAACGGTCTCTTTGTTGTCACACTGGGTTGGTTCGTGGACAGTGTCAGGAAAAATGTGAGGTTGAGTGAGTCCCATTACAGTGTGAAGAGTAATGTGGACAATAACACACGCTTGGATGACTTTAAACTGCTTCCRGGGTATACCGGTGCCGAAAATTCTTGTCTTCCAGCAAGTCTACGTGAGACCAAGAACGTTGATAATGTTGAAGAATTTCAAAGATCTTCTGGTAGAAAATCTAATAGAAGTGTGGACTTCACTTTATCTGGTTACTCCATCTATATTGATCCAGGAATTTCATGTGAATTGAGGAACAAGGTTGTTGATACTGCCACGAGAGAAGGTGCTAGTCTGACGGAACGATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTGACTGAAGGGACATTCGTACAAAGATATCTTGGATATTCGAGTAACCTCATCACACCACTGTGGATTCTCAAAACAGCCAAGGAGAAATATGCACAAAGGCTTGTTCATATGTCTGCTGATTTGGCAAAGCAAGTTGGATTGATGCTTGAAGACATTCATAATGGCATTTTAAGGGAGGAAATAAAGAAGCAAAAAGACAATGAAGTTCATCAGGGCAGTGAAAGTGAATATAGTTACCACGAGAGGCAACAAATAGTGAATGCTGCAAAAATTGGTGTAAGAAGTCGCCGTGGTAGGCAAATGCAGACTTGTCAGACTCCAATTCGTCCTATAACTCCTAACAACCTTCTAGACTCTATCAGCTGGTCTATATCCGAGCCAACTTCAGCTGCTTCCATCTACACAGATTCTTTCAGTGTTGAAGATCATACTGAAAATCATAATACTTCAATATTTCTTGGTGCAAAAGGGGATGGCAAGGACTCAGAAGCTTCATTTTCAAACTCCACTCGTCATCTGACCGAAAGCGAGAAATCAGAGTTGATATTTAAAAGCCATTTTCTCACCATACTCTTCCCAATCGACCGATTTGCCGAGATGGGTCCTTCTTCACAAACTTTCTTCAGCCATAATGGTTTTACATGTCTTCAGGTGTTGGATCATATCCATGCATTTTATCAGGAGAATATGTCAAACCAAGAAATAGAAGCTGCAATTCATACCGATTCACGACATGCTGATAGGCTTAGATCAGTGTACCGCAGTAAAGAAACTGCAGAGCGTGGCTTTGTGTTGTTCAAACGCATTGAATTTTTGGGAAGTCGCACTAGTTTTGAAATGTTGAAGCGTGTAACTGGGGACAACAACTCCAATGTGTATGAGCTATTACTTAGGGCTTAA 1413 0.4154 MEATERLGGQYSPNLHPQCTHLVYSFGGRKFEHALKHGAKNGLFVVTLGWFVDSVRKNVRLSESHYSVKSNVDNNTRLDDFKLLPGYTGAENSCLPASLRETKNVDNVEEFQRSSGRKSNRSVDFTLSGYSIYIDPGISCELRNKVVDTATREGASLTERWFVGCNVSHVVTEGTFVQRYLGYSSNLITPLWILKTAKEKYAQRLVHMSADLAKQVGLMLEDIHNGILREEIKKQKDNEVHQGSESEYSYHERQQIVNAAKIGVRSRRGRQMQTCQTPIRPITPNNLLDSISWSISEPTSAASIYTDSFSVEDHTENHNTSIFLGAKGDGKDSEASFSNSTRHLTESEKSELIFKSHFLTILFPIDRFAEMGPSSQTFFSHNGFTCLQVLDHIHAFYQENMSNQEIEAAIHTDSRHADRLRSVYRSKETAERGFVLFKRIEFLGSRTSFEMLKRVTGDNNSNVYELLLRA* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2760 470 SUPERFAMILY BRCT domain 3 78 IPR036420 -
Amo20g2760 470 Pfam twin BRCT domain 5 50 IPR001357 -
Amo20g2760 470 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 1 470 - -
Amo20g2760 470 ProSiteProfiles BRCT domain profile. 1 68 IPR001357 -
Amo20g2760 470 Gene3D BRCT domain 1 70 IPR036420 -
Amo20g2760 470 Pfam Family of unknown function (DUF6699) 379 454 IPR046522 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2760 Amo-Chr20 126216519 126221685 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2760 - - gmx:100815253 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2760 20 126216519 126221685 Amo20g2760 20 126216519 126221685 ECH
Amo10g2313 10 81003473 81008304 Amo20g2760 20 126216519 126221685 hybridization