Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2738 ATGTTGTTGTGGCCTTGTCCATCATCAGCAGAGAAGACAGTGATTAATGTTGGAGTAGTGCTTGATCTTAGTGAAACAGTGGGGAAGATTGGATTGAGTTGCATCAACATGTCCCTTTCGGATTTCTATGATTCTCATCCTCATTACAACACCAGGATGCTCCTCCATGTCAGAGACTCTCAAACTGATGTTGTTACCGCTGCTTCTGCAGCTGTAGAGTTGATGAAAAAGGAGAAAGTGGAAGCAATAATGGGACCAGTAACATCAATGCAAGCAAGCTTTGTTGTGAATCTTGGAGACAAAGCTCACGTTCCAATCATATCCTTCACCGCAACAAGCCCTTCTCTAACATCGCTTGGCAGTTCCTACTTCTTTCGAATTGCACAAAATGATTCTACTCAAGTACACGCCATAAGCGACATCATCCAATCCTTCGGGTGGAGACAAGCAGTTCCTATCTACATCGACAACGACTATGGCCGCGCCATTATTCCCTTCTTAACCAATTCCCTTCAACAAGCAAATATCAGGGTCCCATACCTCGCTGTTATTCCTCCCTCCGCCACCRCCGATCACATTGAAGAAWAGCTTTACASGCTTATGACCATGGAAACTAGGGTTTTTGTTGTTCATATGGTGGGGAATCCTGGGTCCACTCTCTTTGCCATTGCGGATCGGATTGGAATGATGAAACAAGGCTATGTTTGGATTGTAACCAATGGTATGGCTAATACTTTGGCCTCTCTTGACTTCTCGGATATTCAAGCGATGCAAGGTGTGTTAGGAGTGAAAACATATGTTCCTAAAACCAAAAGGGTTGTTGATTTCCAAGCACGTTGGAAGAGGCGTTTCTTGCAGGACAATCCAGCCATGGTTGATGCAAGCATCAATGTGTTTGGATTATGGGCTTATGATGCCTCAACCGCGCTCGCAAGCGCGGTTGAGAGGGCTAATAATAATAATAATTCAAAACCCGGATTTCGAAACACCACAAATAATGCTTCCAGAAATTTCAGTGAGATTGACAATATAGGAGTGTCTCAGAGGGGTGAAGAATTGCGGGAYGCTTTATCGGACACCAGATTCAGCGGCCTGGCCGGCCAATTCGGCCTTGTCAATGGAGAATTAGAAGCTGCAACTTTTCAGATAATTAACGTAAATGGTAATGGAGAAAAGGTGATAGGATTTTGGACACCACAGAAGAGATTAACAAGGAATCTTAGCAGCCTAATAAAAAGTAGTACAACTGATTTGAATAATAATCATGATAATGTTCTAGGAGCAATGATATGGCCAGGGGATAGTTATTCAGTTCCAAAGGGGTGGGAGATACCAACMAATGGGAAGAAAYTGAGGATTGGAGTYCCGGTGTCATCAAGGCCTCAATTTGTGAAGGTGGAAAATGATGGTGAAACTAACACAACMAAGGTAACTGGTTTTAGCATTGATGTGTTTGAAGCGGTGGTGCAAGCTTTGCCTTATGCTTTGCCATACCAATTCATTCCTTTTGCAAAACCCAATGGGGAGAGCGCCGGCACCTATGATGATTTAATCATGCAGGTCTATTATGGGGTGTTTGATGCTGTGGTGGCAGACACAACGATTATAGCAAACAGGTCAAAGTACGTTGACTTCACGTTGCCGTATACAGAGTCAGGAGTATCAATGGTGGTGCCAGTGAAAGACAAGAGCAAGAAGGGTGCATGGGTGTTCCTAAAGCCTCTAACCTGGGATCTATGGATGACCACTGGTTGTTCCTTCGTGTTCTTTGGATTCGTGGTGTGGGTTCTTGAGCATCGCATCAACAAAGATTTTCGTGGCCCTCCTTCTCACCAGATCGGCACCAGTTTGTGGTTTTCTTTTTCCACCATGGTCTTTGCTCATCGAGAAAAAGTAGTGAGCAACACTGCACGGTTTGTTGTGATAATATGGGTATTTGTGGTGCTGATTTTGACTCAGAGTTACACAGCAAATTTRTCATCACTACTAACRGTGGAGCAACTTCGACCAACMGTGACCAATGTAAATGATCTAATAAAGTATAGAACACGTGTTGGGTACCATACAGGTTCTTTTGTTCGTGGGATCTTGCTCAACCTTGGTTTCAAGGATTTTCAGCTCATAACTTATAATTCCACAGCACAATGTGATGATCTTCTCAGCAGAGGCAGTCAAAACGGTGGAATTGCTGCTGCATTTGATGAAATTCCTTACATTAGGATTCTTCTTGGAACCTATTGCTCTAAGTATACCATGGTGGACCCCACATTTAAAACCGATGGCTTTGGCTTTGTATTCCCAAAAAGTTCTCCTCTGGTGGGTGATGTATCAAGGGCAATTCTGAAAGTAACTGAAGATCCAAGAATGAAAGAAATAGAGAGTGCATGGTTTGAGAAGCGAAGTAGTTGCCAGCAAGAAGATGCATCAGTGTCTTCTTCTAATAGTCTTGGCCTAGACAGCTTCTGGGGCCTATTTCTCATTGCTGCATTGGCTTCCATTTCAGCACTCCTCATCTTTGCAGTTACATTCTTGTATGATCATAGACATCAATGGTGGTTCATCAATAATGATTATTCAACATGGAAGACTCGAATCCGCATCTTGCTGAGAATCTTCGACCAGAGAGACCCTAGGTCTCAAAGATTCAGGAGCGGTGGTACTGATTCAAATCCAGCTTCTCCTTTCAAGGATCACCTTGTGAAGACAGCAATAAATAACGTTAGAAAATTGTTGGGTTTTGTTTACTCTATGAACTTGGTTGTGTTGTTGGGTGTGGCGGCAATGGCAGAAAGAGAAGTGAAAGTGGGAGCGGTGCTTGATGTTGGGGTTGGAATGGTTGGGAAGATGGGTTTAAACAGCATCAGAATGTGCATCCATGATTTCTATGTCTCTAATCCTCATTACAAAACCAGGCTCCAACTTATTCTTAGGGATTCCCAAAGGAACGTTGTTACTGCTGCTGCTCAAGCTTTAGATCTCATAAAGAATGAGCAAGTGGAAGCTGTGATAGGACCAGTTACAACAACGGAAGCCATGTTTGTGATCAACCTCGGAGACAAAGCGCACGTGCCCATTGTCACGTTCTCAGCAACGAGTCCTTCTCTCTCATCCCTCCACACCCCATATTTCTTCCAAATTGCTCAGAAAGATTCAACTCAGGTAGAAGCCATAAGCGCCATTATCCAAGCTTTTCGGTGGAAAGAAGTGGTTCCAATTTATGTAGACAACAGTTATGGCGAAGGACTCATTCCATGGTTAACTAATTCACTTCAAAAAGCATACATCCGTGTTCCTTATCTGTCTGCCATTGATTTCTCAGCCACAGATGATGCCATTGAAAGAGAGCTCTACAAGCTCATGACTATGCAAACTAGAGTCTTTGTCGTTCACATGACACCCCTTCTTGGCTCTCGTCTCTTTGCCATTGCCAAARCCATTGGCATGATGGATCAAGGTTATGTTTGGATTGTCACTGATGGAATGGCTAATTTCTTCAACTCGTTGGACTCTTCAGTTATGGACTCCATGGAAGGTGTCTTGGGTGTTAGGCCTTATATTCCAAGAACTAAACAGTTTCTTGATTTTAGAGCTCGATGGAAACGACAGTTCCTAAGAGACAATCCAACACTTGTTGATGTCAATCTGAATGCTTTTGGAATATGGGCCTATGATGCTACCACCGCATTGGCCATGGCCGTTGAGAAAGTTGACAGCACCCTTTCTGGCTTCACTAATGTGAGCAAGAACTCAAGCAATGTGACTGATCTTGAAAACTTTGGCGTTTCGCGAAATGGTGAGAAGCTGAGAGAAGCTTTGTCAAATGTTAGATTCAAAGGTGTTGGTGGTGACTTCAAATTAGTTGGTGGTGGGGAGTTACAAGCATCAGCATTTGAGATAGTTAATGTGATTGGTAATGGTGAAAAAAACATTGGATTTTGGATGCCAGAAAAGGGACTAATTAGAAGTATGGATGCCAAAACTGCAACAACCGCATATTCAAGTTCTAAAGAGAATCTAGGAAGAATTATATGGCCAGGGGACTCTTACTCTATTCCAAAGGGATGGCAGATTCCCACAAATGGTAAAAAGTTAATGATAGGGGTTCCAGTAAAAGATAGTGGCTACTCTGAATTTGTGAGAATAATCCATGACCCTATTACTAATTCTACAAAGGTCACTGGGTTCTGCATTGATGTCTTCAATGCTGTGGTAGAAGCCTTGCCTTATGCCCTTTCATTTGACTTGATTCCATTTGAAAACTCCAACGGTGAGATGGCAGGAACTTATGATGATTTGGTCAACCAAGTTTATTATGGGAAGTTTGATGGTGTGGTGGGAGATACAACAATTACGGCAAACAGGTCCAGTTATGTTGATTTCACATTGCCGTACACAGAATCTGGTGTGACTATGGTTGTTCCAATAAAAGACAACAGAAAGAAGAATGCATGGGCCTTCTTGAAGCCATTGACATGGGACCTTTGGGTTACAACATTTTGTTCATTTGTATTCATAGGATTCGTTGTTTGGGTTCTTGAACACCGAATTAACAACCATTTCAGAGGGCCTCCTTCTTATCAGATTGGCACTAGCCTGTGGTTTTCCTTCTCAACCATGGTGTTTTCCCATCGGGAGAGGGTAGCAAGCAACTGTGGAAGATTCGTGGTGATAGTATGGGTTTTTGTGGTTCAAATTCTAGTTCAAAGCTACACTGCAAGTCTTACCTCTCTCTTAACGGTTGAACAATTACGCCCGGTTATTACCGATGTGCATCAACTCCTAAAGAATCGGTTGAATGTTGGTTATTTGGATGGTTCTTTTGTTCGTGAAATCTTGAAGGATTTGGGATTCCAAGAAAGCCAGCTCAGGATTTACAGATCTGCAGAAGAATGCAATGATCTCTTCATAAAAGGAACTGCAAATGGTGGCATTGATGCTGCGTTTGATGAAGTTCCATATGTGACACACCTTCTTCAAATTTACTGCTCTAAGTATACCATGATTGAGCCAAGATTTAAAACTGGTGGCTTTGGATTTGTGTTTCCRAAAGGGTCACCTCTTGTAGCAGACATATCAAGGGCAATTTTGAATGTGACTCAAGGAGCCAAAATGAAAACAATTGAGAATGCATGGTTGAATGGAAGCAGTTGTCCAGRATCTAATGCTCAAATTTCTTCTGCGAGTCTAGGACTCGAAAGCTTCTGGGGTCTGTTTCTTGTTATAGGTGTTTCTTGTGCATTAGCACTCATGTTCTTCTTAGCAACATTCCTGTATCAGTATAGACATATTCTGTCAAGCCATCAGCCCAGTACTTCAATATGGACAAGAATTGGAACCTTGCTAAGTATCTTCAATGAGAAAGACTTGAGCTCTCACACTTTCAAGAAAAGTGCAAAGCAAGATGCAAGTGTAGCTAGTAGTCCTGCTCATCATCATGGAATAGGTTCAGCTGAGGCATCACCAAGTACACATTGCCCTTCAAGTCCTTATAGCTACACAGAATCAAATTTTTCATTCTATGGAGACCAAGTAATGTTTAGTCCGGATCGACATGATTATGGAACTCATCAAGGTCATGAAACTCAAGACAGAGAAATGAGGGTGGTGCACGATGATACTCAAGAAGTGGCCACTACAAACAGTAATAATACTAACTCCCAAGCCACATAG 5670 0.4236 MLLWPCPSSAEKTVINVGVVLDLSETVGKIGLSCINMSLSDFYDSHPHYNTRMLLHVRDSQTDVVTAASAAVELMKKEKVEAIMGPVTSMQASFVVNLGDKAHVPIISFTATSPSLTSLGSSYFFRIAQNDSTQVHAISDIIQSFGWRQAVPIYIDNDYGRAIIPFLTNSLQQANIRVPYLAVIPPSATXDHIEEXLYXLMTMETRVFVVHMVGNPGSTLFAIADRIGMMKQGYVWIVTNGMANTLASLDFSDIQAMQGVLGVKTYVPKTKRVVDFQARWKRRFLQDNPAMVDASINVFGLWAYDASTALASAVERANNNNNSKPGFRNTTNNASRNFSEIDNIGVSQRGEELRDALSDTRFSGLAGQFGLVNGELEAATFQIINVNGNGEKVIGFWTPQKRLTRNLSSLIKSSTTDLNNNHDNVLGAMIWPGDSYSVPKGWEIPTNGKKLRIGVPVSSRPQFVKVENDGETNTTKVTGFSIDVFEAVVQALPYALPYQFIPFAKPNGESAGTYDDLIMQVYYGVFDAVVADTTIIANRSKYVDFTLPYTESGVSMVVPVKDKSKKGAWVFLKPLTWDLWMTTGCSFVFFGFVVWVLEHRINKDFRGPPSHQIGTSLWFSFSTMVFAHREKVVSNTARFVVIIWVFVVLILTQSYTANLSSLLTVEQLRPTVTNVNDLIKYRTRVGYHTGSFVRGILLNLGFKDFQLITYNSTAQCDDLLSRGSQNGGIAAAFDEIPYIRILLGTYCSKYTMVDPTFKTDGFGFVFPKSSPLVGDVSRAILKVTEDPRMKEIESAWFEKRSSCQQEDASVSSSNSLGLDSFWGLFLIAALASISALLIFAVTFLYDHRHQWWFINNDYSTWKTRIRILLRIFDQRDPRSQRFRSGGTDSNPASPFKDHLVKTAINNVRKLLGFVYSMNLVVLLGVAAMAEREVKVGAVLDVGVGMVGKMGLNSIRMCIHDFYVSNPHYKTRLQLILRDSQRNVVTAAAQALDLIKNEQVEAVIGPVTTTEAMFVINLGDKAHVPIVTFSATSPSLSSLHTPYFFQIAQKDSTQVEAISAIIQAFRWKEVVPIYVDNSYGEGLIPWLTNSLQKAYIRVPYLSAIDFSATDDAIERELYKLMTMQTRVFVVHMTPLLGSRLFAIAKXIGMMDQGYVWIVTDGMANFFNSLDSSVMDSMEGVLGVRPYIPRTKQFLDFRARWKRQFLRDNPTLVDVNLNAFGIWAYDATTALAMAVEKVDSTLSGFTNVSKNSSNVTDLENFGVSRNGEKLREALSNVRFKGVGGDFKLVGGGELQASAFEIVNVIGNGEKNIGFWMPEKGLIRSMDAKTATTAYSSSKENLGRIIWPGDSYSIPKGWQIPTNGKKLMIGVPVKDSGYSEFVRIIHDPITNSTKVTGFCIDVFNAVVEALPYALSFDLIPFENSNGEMAGTYDDLVNQVYYGKFDGVVGDTTITANRSSYVDFTLPYTESGVTMVVPIKDNRKKNAWAFLKPLTWDLWVTTFCSFVFIGFVVWVLEHRINNHFRGPPSYQIGTSLWFSFSTMVFSHRERVASNCGRFVVIVWVFVVQILVQSYTASLTSLLTVEQLRPVITDVHQLLKNRLNVGYLDGSFVREILKDLGFQESQLRIYRSAEECNDLFIKGTANGGIDAAFDEVPYVTHLLQIYCSKYTMIEPRFKTGGFGFVFPKGSPLVADISRAILNVTQGAKMKTIENAWLNGSSCPXSNAQISSASLGLESFWGLFLVIGVSCALALMFFLATFLYQYRHILSSHQPSTSIWTRIGTLLSIFNEKDLSSHTFKKSAKQDASVASSPAHHHGIGSAEASPSTHCPSSPYSYTESNFSFYGDQVMFSPDRHDYGTHQGHETQDREMRVVHDDTQEVATTNSNNTNSQAT* 1890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2738 1889 Gene3D - 332 451 - -
Amo20g2738 1889 Gene3D - 1260 1363 - -
Amo20g2738 1889 Pfam Ligand-gated ion channel 799 831 IPR001320 GO:0015276|GO:0016020
Amo20g2738 1889 SMART GluR_14 452 799 IPR001320 GO:0015276|GO:0016020
Amo20g2738 1889 SMART GluR_14 1365 1714 IPR001320 GO:0015276|GO:0016020
Amo20g2738 1889 Pfam Receptor family ligand binding region 34 389 IPR001828 -
Amo20g2738 1889 Pfam Receptor family ligand binding region 960 1304 IPR001828 -
Amo20g2738 1889 SUPERFAMILY Periplasmic binding protein-like I 10 443 IPR028082 -
Amo20g2738 1889 MobiDBLite consensus disorder prediction 1873 1889 - -
Amo20g2738 1889 MobiDBLite consensus disorder prediction 1800 1827 - -
Amo20g2738 1889 Gene3D - 1630 1719 - -
Amo20g2738 1889 Gene3D - 452 567 - -
Amo20g2738 1889 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 15 885 - -
Amo20g2738 1889 MobiDBLite consensus disorder prediction 1852 1872 - -
Amo20g2738 1889 CDD GluR_Plant 1362 1712 - -
Amo20g2738 1889 SUPERFAMILY Periplasmic binding protein-like I 926 1346 IPR028082 -
Amo20g2738 1889 SUPERFAMILY Periplasmic binding protein-like II 426 798 - -
Amo20g2738 1889 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 933 1809 - -
Amo20g2738 1889 Gene3D - 1483 1613 - -
Amo20g2738 1889 Gene3D - 568 695 - -
Amo20g2738 1889 Gene3D - 748 805 - -
Amo20g2738 1889 Pfam Ligand-gated ion channel 1714 1744 IPR001320 GO:0015276|GO:0016020
Amo20g2738 1889 Pfam Bacterial extracellular solute-binding proteins, family 3 473 798 IPR001638 -
Amo20g2738 1889 SUPERFAMILY Periplasmic binding protein-like II 1342 1714 - -
Amo20g2738 1889 PANTHER GLUTAMATE RECEPTOR 2.9 15 885 - -
Amo20g2738 1889 CDD GluR_Plant 449 797 - -
Amo20g2738 1889 CDD PBP1_GABAb_receptor_plant 16 407 IPR044440 -
Amo20g2738 1889 Pfam Bacterial extracellular solute-binding proteins, family 3 1389 1713 IPR001638 -
Amo20g2738 1889 CDD PBP1_GABAb_receptor_plant 934 1323 IPR044440 -
Amo20g2738 1889 Gene3D - 1364 1482 - -
Amo20g2738 1889 Gene3D - 132 297 - -
Amo20g2738 1889 Gene3D - 1051 1215 - -
Amo20g2738 1889 PANTHER GLUTAMATE RECEPTOR 2.9 933 1809 - -
Amo20g2738 1889 MobiDBLite consensus disorder prediction 1848 1889 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2738 Amo-Chr20 125552620 125567693 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2738 1 894 Ion Channels AT2G29120 50.390 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2738 K05387 - pvy:116139285 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2738 20 125552620 125567693 Amo20g2738 20 125552620 125567693 ECH