Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2726 ATGGCTTCCAAGTTATGTGATTCATGCAAGTCAGCCTCAGCCACCGTCTACTGCCGCCCTGACGCCGCCTTCCTCTGCTCCCCCTGCGACTCCAAGGTCCACGCCGCTAACAAGCTCGCCTCCCGCCACCCTCGAGTCTCACTCTGCGAGGTCTGCGAGCAGGCACCTGCTCACGTCACCTGCAAGGCCGACGCCGCCTCCCTCTGCCTCGCCTGCGACCGGGATATCCACTCCGCCAACCCTCTCGCTTCCCGCCACGAGCGAATCCCCGTCACTCCCTTCTATCACTCCCTCGCCGCTACCGTCAAGTCTCCGGTCAACTTCCTTGATGACCACAGGTTCTTCTCCGACGCCGATGCTGATGCGGATGTTGATGTCAGCACTGAGGAGGCCGAGGCTGCTTCCTGGCTCCTTCCCACACCTTCTAACCCTTCCAAGGCAGATCTGAACTCGTCTCAGTACATGTTCCAGGAGATGGAACAGGTTCCGTATGTAGATCTGGATTACGGCAACGTGGATCCCAAATCGGAGCCGAAGAGCTCCGCCACCACCGACGGAGTTGTTCCGGTGCAGAGCAAGACCGCTAACGAGCACTACTTTGAGCCTTTCGCCTACGGTGGCTACAAGTACAACTCGCAATCTCAGTCACAGTCACAGATGAGCCATAGCGTGTCGTCGTCGTCGATGGACGTTGGTGTTGTGCCGGACGGGAACGCGATGTCTGAGATATCGAACTGCAAGGTAGCGTCATCGGTGGAGGGAGGGAACCAGGCAGTGACGGTGACGGCGCAGTTCTCGGCGGCGGATAGGGAAGCTAGGGTTTTGAGGTATCGGGAGAAGAGGAAGAACCGAAAGTTCGAGAAGACTATTCGCTACGCTTCTCGTAAGGCTTATGCAGAAACGAGGCCAAGGATCAAAGGCAGATTCGCCAAGCGCACTGAGGTTGACCCTCTCAATGGATACGGCGTCGTTCCGTCGTGTTAA 984 0.5793 MASKLCDSCKSASATVYCRPDAAFLCSPCDSKVHAANKLASRHPRVSLCEVCEQAPAHVTCKADAASLCLACDRDIHSANPLASRHERIPVTPFYHSLAATVKSPVNFLDDHRFFSDADADADVDVSTEEAEAASWLLPTPSNPSKADLNSSQYMFQEMEQVPYVDLDYGNVDPKSEPKSSATTDGVVPVQSKTANEHYFEPFAYGGYKYNSQSQSQSQMSHSVSSSSMDVGVVPDGNAMSEISNCKVASSVEGGNQAVTVTAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEVDPLNGYGVVPSC* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2726 327 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Amo20g2726 327 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Amo20g2726 327 SMART bboxneu5 49 91 IPR000315 GO:0008270
Amo20g2726 327 SMART bboxneu5 1 48 IPR000315 GO:0008270
Amo20g2726 327 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Amo20g2726 327 CDD Bbox1_BBX-like 5 48 - -
Amo20g2726 327 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 326 - -
Amo20g2726 327 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 326 IPR045281 GO:0009909
Amo20g2726 327 ProSiteProfiles CCT domain profile. 270 312 IPR010402 GO:0005515
Amo20g2726 327 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Amo20g2726 327 CDD Bbox1_BBX-like 48 91 - -
Amo20g2726 327 Pfam CCT motif 270 312 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2726 Amo-Chr20 125267495 125269711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2726 1 326 C2C2-CO-like Transcription Factor Family AT5G24930 56.284 3.23e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Amo20g2726 zf-B_box 5.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2726 - - gmx:100794431 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2726 20 125267495 125269711 Amo20g2726 20 125267495 125269711 ECH
Amo10g2289 10 80127578 80129282 Amo20g2726 20 125267495 125269711 hybridization