Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2720 ATGGCGGATGTCGCCGTGATGAGAGAGATTGAGGCCACGGCCTCACGTCTTGGTGTAGATCTCTCCGCCATTGATCTTGACTCCATTCGCCTCCCTCCTGATGACGACCTCGGCATCCAAAGTGATGATGAAGATGTTTACCAAGAGGAAAATCTGGAGTTTGATACTGGGTTTGGGAACATTATAGTGGTGGACAATCTACCTGTTGTTCCAAGGGAGAAGTTTGAGAAGCTTGAAGGTGTAATCAGAAAAATCTATAGCCAGATTGGTCTCATCAAGGAGGATGGACTCTGGATGCCCGTTGATCCACAAACTGAAAAAACTCTGGGTTATTGCTTCATTGAGTATAACACACCTCAGGAAGCTGAGCTTGCTAAAGAGAAGACTCATGGATATAAGTTGGATCGAGCACACATATTTTCTGTGAATATGTTTGATGACTTTGATAGATTCATGAAAGTTCCAGATGAGTGGGCTCCACCTGAAACTAGTCCATACACTCCTGGGGAAAATCTTCAACATTGGCTGACTGACTCAAAAGCCCGAGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTGTTGTGGAATGATGCAAGACATTTGAAACCGGATCCAGTTTATAAGCGTGCATTCTGGACTGAGAGTTTTGTTCAATGGTCCCCAATGGGTACATACCTAGCAACCATACATAGGCAAGGAGCAGCAGTTTGGGGAGGTGCCACAACATTCAATCGTCTCATGCGATATGCTCATCCCCAGGTTAAACTTATTGATTTTTCACCCGGTGAGAAGTATTTGGTAACATATAGTAGCCATGAGCCAAGCAATCCTCGAGATGCAAATAGGGTTGTGATAAATATATTTGATGTGAGAACTGGAAAAGTCATGAGAGATTTTAAGGGAAGTGCTGATGATTTTGCCATTGGAGGTGCTGGAGGTGTTGCAGGAGTGTCATGGCCCATTTTCAGATGGGGTGGAGGAAAGGACGACAAGTACTTTGCAAGACTAGGGAAAAATATGATCTCTGTGTACGAGACAGATACATTCTCTCTTGTGGACAAGAAATCGTTGAAGGTTGAAAGTGTGATGGATTTCAGCTGGTCACCAACTGATCCCATCCTTGCACTTTTTGTTCCTGAATTGGGTGGTGGTAACCAGCCAGCTAGGGTGAGTCTGGTTCAGATCCCCAGTAAAGAGGAACTCAGGCAGAAGAATCTTTTCAGTGTCAGTGATTGCAAGATGTATTGGCAAAGCAATGGAGAGTATCTAGCTGTTAAGGTTGATCGTTACACAAAAACCAAGAAAAGCACTTACACAGGCTTTGAGCTTTTCCGCATAAAAGAGCGAGATATACCCATTGAAGTGTTGGAGCTTGAAAATAAGAATGATAAGATTATTGCATTTGCCTGGGAGCCAAAGGGCCATAGGTTCGCTGTTATTCACGGTGATCACCCAAGGCCTGACATCAGTTTTTACTCAATGAGGACTGCTCAAAATACAGGTCGTGTTTCAAAGCTTACTACTCTCAAGGGAAAGCAAGCTAATGCCCTTTTCTGGTCACCTGCTGGTCGATTCATAATACTTGCTGGATTGAAAGGTCTGAATGGACAGCTTGAATTTTATAATGTGGATGAACTGGAAACCATGGCAACTGCTGAGCATTTTATGGCAACAGACATTGAATGGGATCCTACTGGGAGGTATGTTGCAACCTCTGTAACTTCAGTTCATGAAATGGAAAATGGGTTCAATATATGGTCTTTCCATGGGAAACTTCTTTATCGTATTCTGAAGGATCATTTCTTCCAGTACTTGTGGAGGCCAAGGCCACCAACTCTGCTGAGCCCAGAGAAAGAGGAGGAGATTGCTAAGAACCTGAAGAAGTACAGCAAGAAGTACGAGGCGGAGGACCAAGACGTGTCCATGCTGTTGAGCGAGCAAGAAAGAGAAAAGAGGAAGGCCTTGAAAGATGAATGGGAGAGATGGGTAAATGAGTGGAAGAAGCAGCATGAGGAAGAGAAGTTGGAGAGACAGAGGCTCCGGGACGGAGAAGCAAGTGACGAAGAGGAGGAGTATGAGGCAAAGGAAGTTGAAATCGAAGAAGTTATTGATGTCAAGGAGGAGGTTGTTCCTTTGGATCATGAGTGA 2154 0.4438 MADVAVMREIEATASRLGVDLSAIDLDSIRLPPDDDLGIQSDDEDVYQEENLEFDTGFGNIIVVDNLPVVPREKFEKLEGVIRKIYSQIGLIKEDGLWMPVDPQTEKTLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFSVNMFDDFDRFMKVPDEWAPPETSPYTPGENLQHWLTDSKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPMGTYLATIHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGAGGVAGVSWPIFRWGGGKDDKYFARLGKNMISVYETDTFSLVDKKSLKVESVMDFSWSPTDPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGEYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDHPRPDISFYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGLNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFHGKLLYRILKDHFFQYLWRPRPPTLLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQEREKRKALKDEWERWVNEWKKQHEEEKLERQRLRDGEASDEEEEYEAKEVEIEEVIDVKEEVVPLDHE* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2720 717 CDD RRM_eIF3B 59 143 IPR034363 -
Amo20g2720 717 Gene3D - 178 382 IPR015943 GO:0005515
Amo20g2720 717 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 8 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Amo20g2720 717 MobiDBLite consensus disorder prediction 671 697 - -
Amo20g2720 717 PIRSF Transl_init_eIF3b 6 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Amo20g2720 717 Coils Coil 665 685 - -
Amo20g2720 717 MobiDBLite consensus disorder prediction 671 687 - -
Amo20g2720 717 SUPERFAMILY DPP6 N-terminal domain-like 218 599 - -
Amo20g2720 717 PANTHER BNACNNG51870D PROTEIN 8 713 - -
Amo20g2720 717 Gene3D - 55 154 IPR012677 -
Amo20g2720 717 SUPERFAMILY RNA-binding domain, RBD 58 140 IPR035979 GO:0003676
Amo20g2720 717 SMART rrm1_1 61 143 IPR000504 GO:0003723
Amo20g2720 717 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Amo20g2720 717 Coils Coil 687 707 - -
Amo20g2720 717 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Amo20g2720 717 Pfam Eukaryotic translation initiation factor eIF2A 406 605 IPR013979 -
Amo20g2720 717 Gene3D - 390 628 IPR015943 GO:0005515
Amo20g2720 717 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2720 Amo-Chr20 125152714 125157611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2720 9 712 Eukaryotic Initiation Factors Gene Family AT5G27640 79.007 0.0 1197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2720 K03253 - zju:107419937 1303.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2720 20 125152714 125157611 Amo20g2720 20 125152714 125157611 ECH