Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2693 ATGGAAACAACATGCGTGGATACGTCTCTCACCCTCAACCTTGTTTCCCTTCACAAAACGGATGTTGCGCCGGAGGTTTTGGTTGAAGAATTGCATCGGCTAAGCTGTGAGAACAAGAAGCTAACGGAGACATTGAAGCAAGTATGTGAGAACTATATTGCCTTGAAAACCAAGCTCAGCCAACTGAGCAGCAATAACATGGTGAGTTCCGAGAAAGAAGCCGCGGTGTCAAGGACGCCAACACGGAAGAGAAAGGCGGAGAGTGAGAGCTGCATGAGTACCTATAGTGATAAGTGCAACACCCCAACTAGTACGGATGAAGAAACACTCAAAAGAGCTAAGCATGAAGGTTCGCCAAAGGTTTCCAAGATTGTTGTACGAACTGAAGCATCTGATACTACCAGCTTATATGTGAGGGATGGATATCAATGGAGAAAATATGGGCAGAAAGTGACCAGAGATAACCCCTCTCCTAGGGCTTACTTCAGGTGCTCCAATGCCCCAAACTGCCCCGTCAAGAAGAAGGTGCAAAGGAGTGCAGAAGATCGAAGAATGTTGGTGGCAACATACGAAGGAGAGCACAACCATGTGCAACCGCAAGATTCTTATTATTCATCAAGCCTACAAAGTGATGATCATTATCAAAGCCCTACTAGAGTTGACTTGGTCAATAAGTCAGAATTATTAGAATCGGTTGGCAATAACAATGATGGAGGAAAGTCTTCTTGTGTGCGGCTGCAGCCCCAGCTGTTAGCTCAACAAATGGCCACTTCTTTGACTAAGGATCCCAATTTCACCGCCGCACTTGCAACCGCCATTACAGGAAGAATTCTATCTTCACACTTCTCCTAA 852 0.4566 METTCVDTSLTLNLVSLHKTDVAPEVLVEELHRLSCENKKLTETLKQVCENYIALKTKLSQLSSNNMVSSEKEAAVSRTPTRKRKAESESCMSTYSDKCNTPTSTDEETLKRAKHEGSPKVSKIVVRTEASDTTSLYVRDGYQWRKYGQKVTRDNPSPRAYFRCSNAPNCPVKKKVQRSAEDRRMLVATYEGEHNHVQPQDSYYSSSLQSDDHYQSPTRVDLVNKSELLESVGNNNDGGKSSCVRLQPQLLAQQMATSLTKDPNFTAALATAITGRILSSHFS* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2693 283 ProSiteProfiles WRKY domain profile. 133 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g2693 283 MobiDBLite consensus disorder prediction 195 216 - -
Amo20g2693 283 Coils Coil 31 51 - -
Amo20g2693 283 MobiDBLite consensus disorder prediction 76 91 - -
Amo20g2693 283 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 281 IPR044810 GO:0003700
Amo20g2693 283 SUPERFAMILY WRKY DNA-binding domain 135 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo20g2693 283 Pfam WRKY DNA -binding domain 140 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g2693 283 Gene3D WRKY domain 120 200 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo20g2693 283 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 281 - -
Amo20g2693 283 MobiDBLite consensus disorder prediction 191 216 - -
Amo20g2693 283 MobiDBLite consensus disorder prediction 64 115 - -
Amo20g2693 283 SMART WRKY_cls 138 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2693 Amo-Chr20 124568038 124570415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2693 3 277 WRKY Transcription Factor Family AT1G80840 43.051 3.87e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo20g2693 WRKY 5.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2693 - - gmx:100127373 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2693 20 124568038 124570415 Amo20g2693 20 124568038 124570415 ECH
Amo16g3728 16 148613222 148616022 Amo20g2693 20 124568038 124570415 PCT
Amo20g2693 20 124568038 124570415 Amo16g3728 16 148613222 148616022 PCT