Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2672 ATGGCAAAGTGTCACCGGAACAACGTCGGATCCGTCGTACTCGACCACCGCCACCCTGCCAAGAATGCTGCCACCGCCGGCCACTTCCGCTGGAACTCCATCTCCGCCTCCTCCATCCGCCGGATCGTTCTCGACGCCGTCAGCTGCGGCACCTCACGCTACGGTTACCATCAGCGCCACGACGACGACGACGAAGGATCCAGCTCCGCCGCAACTTCTACAGCGAGTCTGGCCTCCGGCAGCCGCAGGGAGAACCGGCCAGATCAGAAAACAGAGAAGCTCGCGGATCTGCTGAACTTAACGGGGTGCGAGAATGAGGCGGAGGCGAAGAAGAAAGAGGCGCTGGTGGAGCTGAAGCAAGTGGTGAAGGACCTGCAGCAGGGAGAGGACTTGGCGAAGCGGCGCATGGCGGCGACGACGGTGAGGTCGCTTGCGAAGGAACGATCGGAAGTTAGGGGAACGCTCGCTATGCTTGGAGCTATTCCTCCGCTCGTCGGAATGCTCGATTCCGAAGACGTTCATTCTCAGATTGCTTCGCTCTATGCGTTGCTCAATCTCGGGATCGGCAACGATGCAAACAAAGCAGCCATCGTTAAAGTTGGTGCTGTTCACAAGATGTTGAAGTTAATTGAATCACCGGATGCTACTAATTCATCAGTTTCTGAAGCAATTGTTGCTAATTTCCTTGGATTGAGTGCTTTGGATTCAAATAAACCAATAATTGGATCCTCTGGTGCAATTCCATTCCTAGTTAGAACCCTTCAAGATTTGGATTACGAATGTAGCCACCAAGCCAAGCAAGATGCTCTTCGAGCTCTATACAATCTATCAATCTTTCCAACCAACAGTTCATTCATTTTGGAAACTGAGTTGGTCCCCTTTTTGGTTAGTTCAATTGGAGACATGGAAGTGAGTGAGAGAGTGCTTGCGATTCTAAGCAATCTGGTTCCAACTCCAGAGGGCAGGAAAGCTATCAGTGCTGTAAAGGATTCGATCTTCATTCTGGTGGATGTGTTGAATTGGACGGATTCGCCGGAGTGCCAAGAGAAGGCGTCATACATTTTGATGATTATGGCACACAAATCCTACAGCGACAGGCAGGTCATGATTGAGGCTGGGATTGGATCATCGCTGCTTGAATTGACCCTTCTTGGTTCCACATTGGCACAGAAAAGGGCCTCAAGGATCTTGGAATGTTTGAGGACAGACAAAGGGAAACAAGTTTCTAGAAGCTATGGTCGAGGAAGCTTGGGGGCCGATATCTCTGCGCCTATTTTCAGCGCGTCGCCGTCTTTTACGAAGGCTTCGGGTGGAGGAGGTAAAGGCTATTTGGAGGAAGAGGAGGAGGAGGAAGATACGATGAGTGAGGAGAAGAAAGCAGTGAAGCAATTAGTCCAACAGAGTTTGCAAAACAACATGAGGAAAATTGTCAAGAGGGCCAACTTGCGTCAAGATTTTGTTCCATCCCAGCATTTGGCTTCACTTACTTCAAGTTCAACTTCTAAGAGCCTGCCATTTTAA 1521 0.503 MAKCHRNNVGSVVLDHRHPAKNAATAGHFRWNSISASSIRRIVLDAVSCGTSRYGYHQRHDDDDEGSSSAATSTASLASGSRRENRPDQKTEKLADLLNLTGCENEAEAKKKEALVELKQVVKDLQQGEDLAKRRMAATTVRSLAKERSEVRGTLAMLGAIPPLVGMLDSEDVHSQIASLYALLNLGIGNDANKAAIVKVGAVHKMLKLIESPDATNSSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLQDLDYECSHQAKQDALRALYNLSIFPTNSSFILETELVPFLVSSIGDMEVSERVLAILSNLVPTPEGRKAISAVKDSIFILVDVLNWTDSPECQEKASYILMIMAHKSYSDRQVMIEAGIGSSLLELTLLGSTLAQKRASRILECLRTDKGKQVSRSYGRGSLGADISAPIFSASPSFTKASGGGGKGYLEEEEEEEDTMSEEKKAVKQLVQQSLQNNMRKIVKRANLRQDFVPSQHLASLTSSSTSKSLPF* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2672 506 Coils Coil 444 467 - -
Amo20g2672 506 MobiDBLite consensus disorder prediction 58 89 - -
Amo20g2672 506 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 506 - -
Amo20g2672 506 Gene3D - 259 412 IPR011989 -
Amo20g2672 506 Coils Coil 104 124 - -
Amo20g2672 506 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 506 - -
Amo20g2672 506 MobiDBLite consensus disorder prediction 433 459 - -
Amo20g2672 506 Gene3D - 86 258 IPR011989 -
Amo20g2672 506 MobiDBLite consensus disorder prediction 68 82 - -
Amo20g2672 506 SUPERFAMILY ARM repeat 117 398 IPR016024 -
Amo20g2672 506 SMART arm_5 148 188 IPR000225 GO:0005515
Amo20g2672 506 SMART arm_5 190 233 IPR000225 GO:0005515
Amo20g2672 506 SMART arm_5 234 278 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2672 Amo-Chr20 123943907 123946258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2672 125 414 U-box Gene Family AT1G67530 30.303 2.92e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2672 - - zju:107422474 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2672 20 123943907 123946258 Amo20g2672 20 123943907 123946258 ECH
Amo16g3705 16 148175458 148179200 Amo20g2672 20 123943907 123946258 PCT
Amo20g2672 20 123943907 123946258 Amo16g3705 16 148175458 148179200 PCT