Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2661 ATGGATTTGAATCCTAACAAAGTGGAGGGTGCATTAAGTTATCAATTGAAGGTGTATGTTGATTTTTGGGAGATGGAGCCGTTGGATAGCCATTTTTTTGGAATAGACTCCGATGAGGAGTTCCCAAGAGGAGACAATATAGATTTTCTAGAAGACGATTTGGAGGCTGATGAAGATAGACCTCAAGATAAGAGAATAGCAGAGCTGTCACGAGAAGATATCATGCAACTTCAGTTTACAGATGAGGAAGCTGTTTATCGATTCTACAAGACTTATGCAATGATGCACAGTTTCACTATGAGGTTGGATGAAGTCAGACACGATAGCGATGGTTGCATAATTATGCGCCAAATTGTTTGCAATCGGGCGGGCTCAAGAAAGGAAGAGGTTGAAAAGGATGAAAGAATCCAGGAACACCGACCCCTAACTCGAAGTTGTTGCCGGGCAAGAATTTGTGCAAGACTCGATAGAAAAATTTATAAATGGAAGGTCAGGAAGGAAATTGAGGGTGCTTGTGCTATGAATACAGAGTTGCGAGGTGAAAATCCACGAAATCGTAATTTAGACGATGACTACGTTGTTGACCCATTGGTGGTGAAGAGTAAGGGAGCTCCCGTGAAAAACTCAAAATTTAAGCAACAGAGAAGGTGTTCAAACTGCGGTGTGACAGGACACTACAACAAAAGTTGTCCTAATGTTCCTGGTAGAATCCCAAAGGAGCCGGTAGACGATGATACAGAAAAGAATATCAGCAGCCATCCTCCTCTAAGACATGACAGTGTGAAAAATCAGCAGAAGATGGAAAAAGATAGGAACATTGGTGGTGGAACAGCACCAACCTCAGCAGCTAAATCAGCTTTTACTGATCAAGTGAAAACATCAAGTCCTGGTCCCAATATCCCGGTTTGTGCATCTACAAGTAACGAAGAGTTTGGGATGAGTTCCAGAACGGCTGAGTCTCCTGTTGTGGCCCCTGAAACTGGAATGGCAGATTGA 996 0.4287 MDLNPNKVEGALSYQLKVYVDFWEMEPLDSHFFGIDSDEEFPRGDNIDFLEDDLEADEDRPQDKRIAELSREDIMQLQFTDEEAVYRFYKTYAMMHSFTMRLDEVRHDSDGCIIMRQIVCNRAGSRKEEVEKDERIQEHRPLTRSCCRARICARLDRKIYKWKVRKEIEGACAMNTELRGENPRNRNLDDDYVVDPLVVKSKGAPVKNSKFKQQRRCSNCGVTGHYNKSCPNVPGRIPKEPVDDDTEKNISSHPPLRHDSVKNQQKMEKDRNIGGGTAPTSAAKSAFTDQVKTSSPGPNIPVCASTSNEEFGMSSRTAESPVVAPETGMAD* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2661 331 SUPERFAMILY Retrovirus zinc finger-like domains 204 238 IPR036875 GO:0003676|GO:0008270
Amo20g2661 331 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 58 166 - -
Amo20g2661 331 MobiDBLite consensus disorder prediction 228 331 - -
Amo20g2661 331 Pfam FAR1 DNA-binding domain 87 166 IPR004330 -
Amo20g2661 331 MobiDBLite consensus disorder prediction 238 269 - -
Amo20g2661 331 MobiDBLite consensus disorder prediction 278 315 - -
Amo20g2661 331 ProSiteProfiles Zinc finger CCHC-type profile. 215 232 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2661 Amo-Chr20 123292225 123294911 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo20g2661 FAR1 8.8e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2661 - K17604 aip:110267887 251.906