Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2653 ATGGATACACAACAACAACCTCAACCTCATCATCGGTGTGATAAAATTGCAAGCAACAAACCATGGCAGAGTTCACAAGAAGGTCAAAAGGAGCATCAGCAAGAGCAAGTAGATACTACTTTGTTGGATCTGAATCTGAATGTCCATGATGATGATGAGTGCAGCACAGAGTTGAGCCTCATCACGTGTTTGGACATGGATAATTCCTCAAAAACTACTTCAATTGAAGAGAACAATAACAACAACAACAACAACAACACGTGTTGTGCAGGTTCTGATCAAAGAGTGTTCTCTTGCAACTACTGCCAGAGGAAATTCTACAGTTCACAAGCTCTTGGAGGACACCAAAATGCTCACAAGAGAGAGAGATCAATTGCAAAGAGAGGTCAGAATAGGTTATTAGGATCCTCTCCATTTATGATCCCTTTTCTTCATCATCATCATAGATATGCTAGTATTGCATCTTTACCTCTCTATGGTGCTTGTGCAAACAAACCACTTGGAATTCAAGCTCACTCCTTGATTCACAAACCTTCTTTTGTTCATCATCATCATCATATATCAAATGGCTTTGGAAGACCACCTCCCCTCATTGGAAGTAGTAGTGTTGGTAGATTCCAGGTGGCCAAGAACATGCTCAATTCTGCAGCAGATAATGAAGAAATCACAGCTTATCTTGTTACTAGGACTACTCAAGAAGACAATATAATGACCAAGAATAATAAGCACCTTGATTTATCTCTTAAACTCTAG 753 0.3958 MDTQQQPQPHHRCDKIASNKPWQSSQEGQKEHQQEQVDTTLLDLNLNVHDDDECSTELSLITCLDMDNSSKTTSIEENNNNNNNNNTCCAGSDQRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGQNRLLGSSPFMIPFLHHHHRYASIASLPLYGACANKPLGIQAHSLIHKPSFVHHHHHISNGFGRPPPLIGSSSVGRFQVAKNMLNSAADNEEITAYLVTRTTQEDNIMTKNNKHLDLSLKL* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2653 250 Gene3D Classic Zinc Finger 69 137 - -
Amo20g2653 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Amo20g2653 250 MobiDBLite consensus disorder prediction 1 37 - -
Amo20g2653 250 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Amo20g2653 250 SUPERFAMILY beta-beta-alpha zinc fingers 93 124 IPR036236 -
Amo20g2653 250 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 200 250 - -
Amo20g2653 250 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 17 191 - -
Amo20g2653 250 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 200 250 IPR044246 GO:0009788
Amo20g2653 250 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 191 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2653 Amo-Chr20 123027592 123028839 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2653 92 250 C2H2 Transcription Factor Family AT1G80730 48.276 3.92e-33 118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2653 20 123027592 123028839 Amo20g2653 20 123027592 123028839 ECH
Amo10g2195 10 76889928 76891097 Amo20g2653 20 123027592 123028839 hybridization
Amo06g2817 06 93397475 93398344 Amo20g2653 20 123027592 123028839 PCT
Amo20g2653 20 123027592 123028839 Amo06g2817 06 93397475 93398344 PCT