Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2650 ATGGATACACAACAACAACAACCTCATCATCATCGGTGTGATAAAATTGCAAGCAAGAAACCATGGCAGAGTTCACAAGAAGATCAAAAGGAGCATCAGCAAGAGCAAGTAGATACTACTTTGTTGGATCTGAATCTGAATGTCCATGATGATGATGAGTGCAGCACAGAGTTGAGCCTCATCACGTGTTTGGACATGGATAATTCCTCAAAAACTACTTCAATTGAAGACAACAACAACAACAACACATGTTGTGCAGGTTCTGATCAAAGAGTGTTCTCTTGCAACTACTGCCAGAGGAAATTCTACAGTTCACAAGCTCTTGGAGGACACCAAAATGCTCACAAGAGAGAGAGATCAATTGCAAAGAGAGGTCAGAATAGGTTATTAGGATCCTCTCCATTTATGATCCCTTTTCTTCATCATCATCATAGATATGCTAGTATTGCATCTTTACCTCTCTATGGTGCTTGTGCAAACAAACCACTTGGAATTCAAGCTCACTCCTTGATTCACAAACCTTCTTTTGTTCATCATCATCATCATATATCAAATGGCTTTGGAAGACCACCTCCCCTCATTGGAAGTAGTAGTGTTGGTAGATTCCAGGTGGCCAAGAACATGCTCAATTCTGCAGCAGATAATGAAGAAATCACAGCTTATCTTGTTACTAGGACTACTCAAGAAGACAATATAATGACCAAGAATAATAAGCACCTTGATTTATCTCTTAAACTCTAG 741 0.3941 MDTQQQQPHHHRCDKIASKKPWQSSQEDQKEHQQEQVDTTLLDLNLNVHDDDECSTELSLITCLDMDNSSKTTSIEDNNNNNTCCAGSDQRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGQNRLLGSSPFMIPFLHHHHRYASIASLPLYGACANKPLGIQAHSLIHKPSFVHHHHHISNGFGRPPPLIGSSSVGRFQVAKNMLNSAADNEEITAYLVTRTTQEDNIMTKNNKHLDLSLKL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2650 246 MobiDBLite consensus disorder prediction 1 36 - -
Amo20g2650 246 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Amo20g2650 246 Gene3D Classic Zinc Finger 68 133 - -
Amo20g2650 246 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 187 IPR044246 GO:0009788
Amo20g2650 246 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 196 246 IPR044246 GO:0009788
Amo20g2650 246 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 196 246 - -
Amo20g2650 246 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 187 - -
Amo20g2650 246 SUPERFAMILY beta-beta-alpha zinc fingers 89 120 IPR036236 -
Amo20g2650 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2650 Amo-Chr20 122933371 122934419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2650 88 246 C2H2 Transcription Factor Family AT1G80730 48.276 3.29e-33 118