Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2639 ATGTGTTGCAATTCCTCAAAAGACACACAACAAACATTGAAAATGAACCCTGTTCCTATGATTCTCTCCATGTTCCTGATCCTCCTTCTTCACCGTGCAGTTGCACAAACACAACACCACCCTCCTTTTCATTCTCCTGCACCCGCACCTGCACCTGCACCTGTTCCTGTTTCTCAACCCATTGCTCCACTTTTCACCTCCAATCCCATCCCTGCAGCTCTCTCTCCTGGATTTCAGGTTGGGGAACAACAACAGCACCGAAAAAGTTCACACAACAAAACGGTGGTTATATCTGTGGCCGTAGCCACCGGTGCAGTTGGTGCAGTTATTCTCACTTTGCTATGCTTCTGGATTTGCCATACCAAGCGTCCCTCAAAATCAAACAAGAAGAATCAAAGTCTTCACATCTCAGTGGAGAAAGGGCTCATAGGAATGAAGACGATTGGTATGAAAGGTTGTGCTCCAATCATTGATTATAAACAAATAGAGAAAAGCACGAATAATTTTGACGAAAGTAACATCTTGGGTGAAGGAGGTTTTGGATGTGTTTACAAGGCTCGTTTGGATGATAATCTTGTTGTTGCTGTTAAGAAGCTACACTGTCAAACTCAAAATGCTGAGAGAGAATTCGAGAATGAGGTCCAGTTGTTGAGCAAAATTCAGCATCCCAATATAATTCCTCTGCTGGCTTGTAGCATTAATGGGGACACCAGGTTCATCGTATATCAGTTGATGCAAAATGGATCCTTAGAAGCTCACTTACATGGTAACAATCAAATTTTAAATTATCTTAGTTCTACTGATATCTTTATTTTCCACCAAACAAAAAATGACGATGAAGGATCTACTAGAGGGTCTGCATTGACTTGGAACATGAGGATGAAGATTGCTCTTGACACGGCAAGAGGATTAGAATATCTGCATGAGCATTGTCACCCTCCTGTCATCCATAGAGATATGAAATCTTCCAATATTCTTTTGGATGCAAACTTCAACGCTAAGCTATCTGATTTTGGGCTTGCCATAACTGATGGGTCCCAAAGCAAGAAGAACATTAAGCTTTCAGGCACATTGGGGTACGTAGCCCCAGAGTACCTTTTAGATGTAAGTGATATTTATGTATTGATAGGGAAATTGACAGATAAAAGCGATGTGTATGCATTTGGGGTTGTACTTCTTGAACTTCTGTTAGGAAGGAAGCCTGTGGAGAAACTGGCACCAGCTCAATGCCAATCTATTGTCACATGGGCGATGCCGGCACTGACAGACAGATCCAAACTTAGGAACATTGTGGATCCAGTGATCAAAGATACAATGGATGTCAAGCACTTATATCAGGTTGCTGCTGTTGCTGTTCTCTGTGTTCAGCCTGAGCCAAGTTACCGTCCTCTAATCACTGATGTTCTTCATTCACTTGTCCCTCTTGTTCCCATTCATCTTGGAGGAACACTCAGATCTCATTGA 1464 0.4235 MCCNSSKDTQQTLKMNPVPMILSMFLILLLHRAVAQTQHHPPFHSPAPAPAPAPVPVSQPIAPLFTSNPIPAALSPGFQVGEQQQHRKSSHNKTVVISVAVATGAVGAVILTLLCFWICHTKRPSKSNKKNQSLHISVEKGLIGMKTIGMKGCAPIIDYKQIEKSTNNFDESNILGEGGFGCVYKARLDDNLVVAVKKLHCQTQNAEREFENEVQLLSKIQHPNIIPLLACSINGDTRFIVYQLMQNGSLEAHLHGNNQILNYLSSTDIFIFHQTKNDDEGSTRGSALTWNMRMKIALDTARGLEYLHEHCHPPVIHRDMKSSNILLDANFNAKLSDFGLAITDGSQSKKNIKLSGTLGYVAPEYLLDVSDIYVLIGKLTDKSDVYAFGVVLLELLLGRKPVEKLAPAQCQSIVTWAMPALTDRSKLRNIVDPVIKDTMDVKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLVPLVPIHLGGTLRSH* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2639 487 SMART serkin_6 169 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2639 487 Gene3D Phosphorylase Kinase; domain 1 134 243 - -
Amo20g2639 487 Pfam Protein tyrosine and serine/threonine kinase 173 414 IPR001245 GO:0004672|GO:0006468
Amo20g2639 487 CDD STKc_IRAK 175 475 - -
Amo20g2639 487 Gene3D Transferase(Phosphotransferase) domain 1 245 477 - -
Amo20g2639 487 PANTHER BNAA04G14780D PROTEIN 70 260 - -
Amo20g2639 487 PANTHER BNAA04G14780D PROTEIN 281 486 - -
Amo20g2639 487 ProSitePatterns Protein kinases ATP-binding region signature. 175 198 IPR017441 GO:0005524
Amo20g2639 487 ProSiteProfiles Protein kinase domain profile. 169 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2639 487 SUPERFAMILY Protein kinase-like (PK-like) 153 472 IPR011009 -
Amo20g2639 487 PANTHER OS01G0750732 PROTEIN 70 260 - -
Amo20g2639 487 PANTHER OS01G0750732 PROTEIN 281 486 - -
Amo20g2639 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 315 327 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2639 Amo-Chr20 122675548 122679141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2639 156 476 Receptor kinase-like Gene Family AT3G58690 44.479 3.97e-88 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Amo20g2639 PK_Tyr_Ser-Thr 3.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2639 - - ahf:112784689 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2639 20 122675548 122679141 Amo20g2639 20 122675548 122679141 ECH
Amo10g2174 10 76581685 76585259 Amo20g2639 20 122675548 122679141 hybridization
Amo16g3689 16 147903293 147909295 Amo20g2639 20 122675548 122679141 PCT
Amo06g2826 06 93499379 93502803 Amo20g2639 20 122675548 122679141 PCT
Amo20g2639 20 122675548 122679141 Amo16g3689 16 147903293 147909295 PCT
Amo20g2639 20 122675548 122679141 Amo06g2826 06 93499379 93502803 PCT