Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2630 ATGATGATGATGACTACTACTTCTACTACTGCAGATTATGAAAGCGTGAAGCAGCTTCCTCCTGGGTTTTTGTTCTCTCCAACGGATGAAGAACTTGTCCTTCACTTTCTCTATGCCAAGGCTTCTCTTTTGCCATGCCATCCCAACATCATCCCTGATCTTGATCTCTCTCTCGCTCATCCTTCCCAACTCAACGATAAAGCGTTGTCAAGCGGAAATCAATACTATTTCTTCAGCAAAGTGAAGGAAAAAAGAATAACAGAAAATGGGTATTGGAAGGAAATAGGTGAAAGTGAAGCAATATTGTCATCAACGGTTGAGAAGAAAGTAGGGACAAAGAAGAACCTTGTATTCCACATAGGAGAAGCTCCACACGGCATTGAAACCAGTTGGGTCATGCAAGAATATCATATTTGCCGATCCTCTAACATTATTTCTACAAGTAGAGCCAGAAGAAAACACGATCATCAAATTTGGAGCAAATGGGTTTTGTGCAAAGTGTATGAAAAGAAGGGGTCCGTACGAGGTGTAAACTACTGTAGCGACGATGATGACAGTGGGACAGAGCTATCTTGGCTTGACGAAATTTATCTCTCGTTGGATGATGATCTCGAAGAAATTAGCGTCTCCATTTTAGATTGA 642 0.4128 MMMMTTTSTTADYESVKQLPPGFLFSPTDEELVLHFLYAKASLLPCHPNIIPDLDLSLAHPSQLNDKALSSGNQYYFFSKVKEKRITENGYWKEIGESEAILSSTVEKKVGTKKNLVFHIGEAPHGIETSWVMQEYHICRSSNIISTSRARRKHDHQIWSKWVLCKVYEKKGSVRGVNYCSDDDDSGTELSWLDEIYLSLDDDLEEISVSILD* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2630 213 Pfam No apical meristem (NAM) protein 20 138 IPR003441 GO:0003677|GO:0006355
Amo20g2630 213 Gene3D NAC domain 28 174 IPR036093 GO:0003677|GO:0006355
Amo20g2630 213 ProSiteProfiles NAC domain profile. 19 170 IPR003441 GO:0003677|GO:0006355
Amo20g2630 213 SUPERFAMILY NAC domain 15 170 IPR036093 GO:0003677|GO:0006355
Amo20g2630 213 PANTHER NAC TRANSCRIPTION FACTOR 56 15 208 - -
Amo20g2630 213 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 15 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2630 Amo-Chr20 122060239 122061597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2630 19 178 NAC Transcription Factor Family AT1G69490 38.095 9.32e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo20g2630 NAM 9.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2630 - - adu:107470472 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2630 20 122060239 122061597 Amo20g2630 20 122060239 122061597 ECH