Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2606 ATGGGTAACGAAGAAGACTTCGCCGGAGAACCCAACTCCTTTAGGAAGGAGGCACCCGCCGGAACTTCCAACCTCCTCCGGCGAGCAGCGGAGCTCATTGCCACCGTGCTCTCCCTCTCCCTCTCGATCAGGGCCTTCGCCACCAAATGGCAACTCATCCGGACCAAGCTCGAGGAGCTCCACTCCGGCCTAATCGCCGCCGAGAACTGCGACTCCGGCGAGAACCCACAGCTCACGGGCATCCTCCCATCGGTGATTTCGACCGCCGGAGAGTGCCGCGACTTGGCGCGCCGTTGCTCCGACCTCTCCTACAGCGGGAAGCTCCTTATGCAGAGCGATTTGGACGTGGCGATCGCAAAGCTGGACGGCCACGTCAGCACCCTCTCGGAGATTTACAAAAAGGGAATATTGGCGAATGGGTCTGCCCTCGTCGTTTCAAAACCGAGTCTTGGCGCTTCAAGAGAAGACATAAGGTTCTACGTGAGGGACCTATTAACGAGGATGAAGATTGGGGATTTGGGTATGAAGAAAGTGGCTCTCAGGAACCTGTACGAGGTTGTCGTCGAGGATGAGAGGTACGTTAAGGCCGTTGTGGACGTTGGTGACGTGGTTCATGTGCTGGTTGGGTTTCTTGGTTCAACTGAATCGGGACTCCAAGAGGAGAGTGCAAAGGTTGTTTCTGTGATTGCAGGATTTGGTTGCTACAAGGGCAATTTGGTAAATTCAGGAGTGGTTGCGCCGTTGGTTAGGGTGCTGGATTGTGGGAGCGAAGAAGGGAAAGTTGCTGCAGCGAGGTGTTTGGTGAAGCTCACTGAGAATTCTGATAACGCTTGGTGTGTTTCTGCACATGGTGGTGTCACTGCGTTGCTTAGAATTTGTGATGGTGATGATGGTGGTTGTGACGGAGATTTGATTGGTCATGCGTGCGGTGTGTTAAGCAATCTTGTTAGTGTTGAAGAGATTAAGAGGTTTATGATTGAGGAAGGTGCGGTTTCTACGTTTATAAGGCTTGTGAGGTCCAGGGATGAAGCCATTCAAGTGAATTCAATAGGCTTCATTCAGAACATTGCCTCTGGTGATGAATTGGTTAAGCAGATGGTGATTAGAGAAGGTGGAATCCGTGCTCTGTTGCGTGTTCTTGATCCTAAATGGCCCTGTTCTTACAAAACAAGGGAGATTTCAATAAGGGCTATTGAGAATTTGTTTTTCTCTCCGCTTAGCTCTGTGAGTGCTTTGATTAGTTACGGTTTTGTGGATAGTTTGCTGTATTATGTTCGAAATGGCGAGGTTTCCATTCAAGAATTGGCGCTGAAAGTGGCATTTCGATTGTCTGGAACGTCCGAGGAGGCCAAGAAATCAATGGGGGATGCAGGTTTCATGGCTGAGCTTGTGAAATTCCTGAATGCGAAATCGTTCGAGGTTCGCGAAATGGCAGCTGAGGCACTCTCTGGGTTGGTTATGTTGCCTAAGAACAGAAAGAGGTTTGTGCAGGATGACCATAACATTGCACTTATCCTTCAATTGCTTGATCCTGAAGAGGGGAATTCAGGTAACAAAAAGTACTTAATCTCAATCTTAATGTCATTGACAAGTTGCAATAGTGGGAGGAAAAAGATTGTTAGTTCTGGTTATGCAAAGAGCATTGAGAAGCTTGCAGATGCTCAAGTTTCTTCTGATGCCAAGAAACTTGCAAAGAAGCTATCCACAAACAGGTTCCGCAGCTTGTTCAGTGGAATCTGGCATTCATGA 1749 0.4883 MGNEEDFAGEPNSFRKEAPAGTSNLLRRAAELIATVLSLSLSIRAFATKWQLIRTKLEELHSGLIAAENCDSGENPQLTGILPSVISTAGECRDLARRCSDLSYSGKLLMQSDLDVAIAKLDGHVSTLSEIYKKGILANGSALVVSKPSLGASREDIRFYVRDLLTRMKIGDLGMKKVALRNLYEVVVEDERYVKAVVDVGDVVHVLVGFLGSTESGLQEESAKVVSVIAGFGCYKGNLVNSGVVAPLVRVLDCGSEEGKVAAARCLVKLTENSDNAWCVSAHGGVTALLRICDGDDGGCDGDLIGHACGVLSNLVSVEEIKRFMIEEGAVSTFIRLVRSRDEAIQVNSIGFIQNIASGDELVKQMVIREGGIRALLRVLDPKWPCSYKTREISIRAIENLFFSPLSSVSALISYGFVDSLLYYVRNGEVSIQELALKVAFRLSGTSEEAKKSMGDAGFMAELVKFLNAKSFEVREMAAEALSGLVMLPKNRKRFVQDDHNIALILQLLDPEEGNSGNKKYLISILMSLTSCNSGRKKIVSSGYAKSIEKLADAQVSSDAKKLAKKLSTNRFRSLFSGIWHS* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2606 582 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 329 372 IPR000225 GO:0005515
Amo20g2606 582 Pfam Armadillo/beta-catenin-like repeat 320 358 IPR000225 GO:0005515
Amo20g2606 582 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 9 582 - -
Amo20g2606 582 Gene3D - 160 571 IPR011989 -
Amo20g2606 582 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 284 330 IPR000225 GO:0005515
Amo20g2606 582 SUPERFAMILY ARM repeat 143 555 IPR016024 -
Amo20g2606 582 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 9 582 - -
Amo20g2606 582 SMART arm_5 273 317 IPR000225 GO:0005515
Amo20g2606 582 SMART arm_5 360 403 IPR000225 GO:0005515
Amo20g2606 582 SMART arm_5 447 487 IPR000225 GO:0005515
Amo20g2606 582 SMART arm_5 190 231 IPR000225 GO:0005515
Amo20g2606 582 SMART arm_5 318 358 IPR000225 GO:0005515
Amo20g2606 582 SMART arm_5 232 272 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2606 Amo-Chr20 121647371 121649479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2606 144 381 U-box Gene Family AT2G23140 25.794 1.21e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2606 - - adu:107480628 1088.17