Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2600 ATGGATTATGGAAGTGTAGTTATTACTATACCAAACTCAACAATTCATACATACACCACCAATTCTATGATGATGATGACTGCAGATTATGAAAGCGTGAAGCAGCTTCCTCCTGGGTTTTTGTTCTCTCCAACGGATGAAGAACTTGTCCTTCACTTTCTCTATGCCAAGGCTTCTCTTTTGCCATGCCATCCCAACATCATCCCTGATCTTGATGTCTCTCTCGCTCATCCTTCCCAACTCAACGGTAAAGCGTTGTCAAGCGGAAATCAATACTATTTCTTCAGCAAAGTGAAGGAAAAAAGAATAACAGAAAATGGGTATTGGAAGGAAATAGGTGAAAGTGAAGCAATATTGTCATCAACGTTTGAGAAGAAAGTAGGGACAAAGAAGAACCTTGTATTCCACATAGGAGAAGCTCCACACGGCATTGAAACCAGTTGGGTCATGCAAGAATATCATATTTGCCCATCCTCTAACATTATTTCTACAACTAGAGCCAGAAGAAAACACGATCATCAAATTTGGAGCAAATGGGTTTTGTGCAAAGTGTATGAAAAGAAGGGGTCCGTACGAGGTGTAAACTACTGTAGCGACGATGATGACAGTGGGACAGAGCTATCTTGGCTTGACGAAATTTATCTCTCGTTGGATGATGATCTGGAAGAAATTAGCGTCTCCATTTTAGATTGA 693 0.4055 MDYGSVVITIPNSTIHTYTTNSMMMMTADYESVKQLPPGFLFSPTDEELVLHFLYAKASLLPCHPNIIPDLDVSLAHPSQLNGKALSSGNQYYFFSKVKEKRITENGYWKEIGESEAILSSTFEKKVGTKKNLVFHIGEAPHGIETSWVMQEYHICPSSNIISTTRARRKHDHQIWSKWVLCKVYEKKGSVRGVNYCSDDDDSGTELSWLDEIYLSLDDDLEEISVSILD* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2600 230 Pfam No apical meristem (NAM) protein 37 155 IPR003441 GO:0003677|GO:0006355
Amo20g2600 230 Gene3D NAC domain 45 191 IPR036093 GO:0003677|GO:0006355
Amo20g2600 230 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 29 225 - -
Amo20g2600 230 PANTHER NAC TRANSCRIPTION FACTOR 56 29 225 - -
Amo20g2600 230 SUPERFAMILY NAC domain 22 187 IPR036093 GO:0003677|GO:0006355
Amo20g2600 230 ProSiteProfiles NAC domain profile. 36 187 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2600 Amo-Chr20 121492324 121493402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2600 36 195 NAC Transcription Factor Family AT1G69490 38.095 4.87e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo20g2600 NAM 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2600 - - adu:107470472 475.707