Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2584 ATGCTTTCTTTGTACAATAACAAGTTGAATAGAATTTTGGCGGATGAGATGGGTCTTGGAAAAACTGTGCAGGTTATGGCATTGATTGCATACTTCATGGAATTTAAAGCAAACTATGGCCCGCTTCTTATAATAGTACCGAATGCTGTTTTAGTTAACTGGAAGAGCAAGTTTTATAATTGGCTACCATCTGTATCGTGCATTTTTTATGTTGGAAGCAAGGATCAACGGTCAAAATTGTTTTCACAACTGATGAGCAAGAAAGTACCAAGAACAAAAGAAGAACTCCTTGAACTCAATGGCATGAGCAAGGCCAAGGTAAGCAATTACGGTGATCAGATACTGGAAACCATTGAAAATACTATTAATGAGTATTACAAGTTGGATAAAAGCATCAATGGCAGTGCTGATTCTGCAAAAAGGAGACGAGATGCAAATGGAGGTCTAGATAGAACTATGAAAATGTTGGAATGA 474 0.3713 MLSLYNNKLNRILADEMGLGKTVQVMALIAYFMEFKANYGPLLIIVPNAVLVNWKSKFYNWLPSVSCIFYVGSKDQRSKLFSQLMSKKVPRTKEELLELNGMSKAKVSNYGDQILETIENTINEYYKLDKSINGSADSAKRRRDANGGLDRTMKMLE* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2584 157 MobiDBLite consensus disorder prediction 137 157 - -
Amo20g2584 157 Pfam SNF2-related domain 9 89 IPR000330 GO:0005524|GO:0140658
Amo20g2584 157 Gene3D - 1 135 IPR038718 -
Amo20g2584 157 PANTHER ATP-DEPENDENT HELICASE BRM 1 85 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
Amo20g2584 157 Pfam HRDC domain 85 118 IPR002121 GO:0003676
Amo20g2584 157 PANTHER SNF2/RAD54 HELICASE FAMILY 1 85 - -
Amo20g2584 157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 88 IPR027417 -
Amo20g2584 157 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 2 156 IPR014001 -
Amo20g2584 157 SUPERFAMILY HRDC-like 85 122 IPR010997 GO:0000166|GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2584 Amo-Chr20 121043135 121044155 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo20g2584 SNF2_N 2.9e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2584 - - aip:107604671 297.36