Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2573 ATGGCCGCAATGAAGTCAATTCCAGGGTACCGGTTTCATCCAACCGATGTTGAGCTGGTTCAGTACTTTCTGAAAAGGAAGGTGATGGGGAAGAGATTCCCTTGTGATGTGATTGCTGAACTTGATATATACAAATATCCGCCGTGGGATCTACCAGATCATTCTTTGCTTAAAACTGGAGATTTGGAATGGTACTTCTTTTGCCCTCGAGGGAAGAAGTATTCGAGCGGAGGGAGGATGAATAGGGCCACAGAATGTGGGTACTGGAAGACTACTGGCAAAGATAGATCCGTTGAGAACAAGAAGCTTGTTGTGGGCATGATAAAGACTCTGGTGTTTCACAATGGTAAAGCACCCAAGGGAGATCGAACTGATTGGGTTTTGCATGAATACCGACTTCAAGATAAGGACCTTGCTGATAAGGGTGTTCAACAGGATTCTTATGTGATATGTAAAGTGTTTCAAAAGGATGGTCCTGGTCCTAGGAATGGTGCACAATATGGAAGGCCGTTTAATGAGGAAGACTGGGATAAAGAGGATGAAATTGACTGTGTAGAATCTGCACCTGTTGCTGCTCTACCTGCTGCAGTTCCTATACAACCCGCTTCATGTCATAGCTCTGTTGTGAATAACGTGAATCTCTCTGTGAGTGAATGCTATGGGTTGACCTCTGTTTCGTGTTTAACAGGGCCAATGCCTTCTTGCTCAGCACATCCTTCAGCTCCAAGTAATCAAGTTGATGGTGACATTACACCAGTGCCTGGTTCCTCCATAGAAGATAACATAATGGCTCCTACTCAGAACACCACAACTGAAAAGGTTGACAATCCTCCTGACATAAACAATGCTGAAGGAACACCTTGCTTTGATCCCAATGAGATTTTTGGGGGTCTGGGTGACCTTGATGGTTTGTTCGAAATGGGTGGAATTGGACATGGTTTTTCCTGCGGCCAAAATGGTGGATATACTGTGAATGAAATGCTTTCTGCGAGTGATGGGTTGCGTTTCCCTGATCCCCTGGACTACTTGGAGTTGGGTGACCTCGACACCCCATTGTTATGGGAGACTAATGAACAAGGAAATTGGAGCCAGGACAATAAATGA 1104 0.4493 MAAMKSIPGYRFHPTDVELVQYFLKRKVMGKRFPCDVIAELDIYKYPPWDLPDHSLLKTGDLEWYFFCPRGKKYSSGGRMNRATECGYWKTTGKDRSVENKKLVVGMIKTLVFHNGKAPKGDRTDWVLHEYRLQDKDLADKGVQQDSYVICKVFQKDGPGPRNGAQYGRPFNEEDWDKEDEIDCVESAPVAALPAAVPIQPASCHSSVVNNVNLSVSECYGLTSVSCLTGPMPSCSAHPSAPSNQVDGDITPVPGSSIEDNIMAPTQNTTTEKVDNPPDINNAEGTPCFDPNEIFGGLGDLDGLFEMGGIGHGFSCGQNGGYTVNEMLSASDGLRFPDPLDYLELGDLDTPLLWETNEQGNWSQDNK* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2573 367 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 240 - -
Amo20g2573 367 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Amo20g2573 367 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Amo20g2573 367 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Amo20g2573 367 PANTHER PLANT NAC DOMAIN PROTEIN 1 240 - -
Amo20g2573 367 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2573 Amo-Chr20 120515985 120519140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2573 1 359 NAC Transcription Factor Family AT5G09330 42.162 1.47e-91 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo20g2573 NAM 3.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2573 - - adu:107470479 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2573 20 120515985 120519140 Amo20g2573 20 120515985 120519140 ECH
Amo10g2083 10 74662546 74664564 Amo20g2573 20 120515985 120519140 hybridization
Amo13g3750 13 126640313 126642673 Amo20g2573 20 120515985 120519140 PCT
Amo03g2847 03 119392253 119394880 Amo20g2573 20 120515985 120519140 PCT
Amo20g2573 20 120515985 120519140 Amo13g3750 13 126640313 126642673 PCT
Amo20g2573 20 120515985 120519140 Amo03g2847 03 119392253 119394880 PCT