Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2571 ATGGCCACTTTCCTTCCCAAACCAGCACCATCAGAATCACCCCAATGGCTCCTCCATGTTAACATGGATCCACAAAGCATAACCCGCTTCTTCTCGTCTGAACCTCAAAACCCTCCACAAACCAGAAATGATGAAAAAACACTCGAAGGAATCGCTGCTATTGTTGGAGAACACGTCCTCTTTGGGACAAAAAATGATAGTAACCCAACCCACCACAAAATGATGGAACATAACAAGACGGAGAATGGTCCGGTCATCACCAAGAGGTACAGAGGGGTCAGGAAAAGGCCCTGGGGAAGGTGGTCGGCCGAGATACGCGACCGTATTGGGAGGTGCCGCCACTGGCTTGGCACCTTCGACACCGCGGAGGAGGCGGCGCGTGCCTACGATGCGGCGGCTAGGCGCCTGAGAGGGTCCAAGGCTAGAACCAACTTCGAGATACCGTCGGTGTTGCCGGTTTCGGCGTTCCCGGTCGTCCCTCGTAAAAGGCAGCGGCGGCAACTCCCGCAAAGAGGAATAGGGGCGTCCGCGTGTGGCGCATAG 543 0.5562 MATFLPKPAPSESPQWLLHVNMDPQSITRFFSSEPQNPPQTRNDEKTLEGIAAIVGEHVLFGTKNDSNPTHHKMMEHNKTENGPVITKRYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPVSAFPVVPRKRQRRQLPQRGIGASACGA* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2571 180 SUPERFAMILY DNA-binding domain 89 146 IPR016177 GO:0003677
Amo20g2571 180 CDD AP2 88 147 IPR001471 GO:0003700|GO:0006355
Amo20g2571 180 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700|GO:0006355
Amo20g2571 180 SMART rav1_2 89 152 IPR001471 GO:0003700|GO:0006355
Amo20g2571 180 Gene3D AP2/ERF domain 88 147 IPR036955 GO:0003700|GO:0006355
Amo20g2571 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084 39 150 - -
Amo20g2571 180 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Amo20g2571 180 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Amo20g2571 180 Pfam AP2 domain 89 138 IPR001471 GO:0003700|GO:0006355
Amo20g2571 180 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 39 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2571 Amo-Chr20 120478227 120478769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2571 17 152 AP2-EREBP Transcription Factor Family AT1G80580 56.250 1.14e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo20g2571 AP2 1.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2571 - - cpap:110821140 163.31