Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2556 ATGGAGATGAAGATGAATGGGATTACTACCACCACTTGTGAGTCTCAAAACAAAGCGAGGCTTGCAATTCTGGAACTTGCACACATGATGAGTGTCCCAATGTCCCTCGTCGCCGTCATCAATCTCAAGGTCCCCCAAGCCATATGGCAAGGCGGTTCCAACGCTCCCATCTCCGCCTCTCAAATTCTCGCCCGCGGTGGTGCCGCCTATGACGCTGAGAACCTTCAGCGCATTCTCCGCTTGCTGGCCAGCTATAACATATTCCTGGAACACCTTAATAGCAGCGGTGAAAGGAAGTATTCACTCACTGATATTGGCAAAACTCTCATTGATGATGCTGAAGGTTTGTCCTATGCATATTACATGCTCCAGCACCATCAGGATGCATTGATGCGAGCATGGCCATTGATGGAGGAGACAGTGAAGGATCCAACAGTGGAGCCATTCAAGAAAGCAAACGGAGAGGGTGCAATTTCATATTATACAAAGAGACCAGATGTATTGAAATTGGCTGTTAAATCCTTATGTGGAATGTCCATACCTTTAATGAAGGACATCTTGGATTCCTATGATGGCTTCCAAGGTGTGGACACATTGGTTGATGTTGGTGGCAACAATGGTATCTCTTTACGCTCGATCATGGAAAAATACCCAAATGTGCGTAAGGGCATCAACTTTGATCTTCCAGATATGGTGGCCAATGCACCACAGATTCCAGGTGTAACTCATGTGGGTGGCGACGCGTTTGAATCTGTTCCTAGTGGAGATGCCATCTTCATAAAGTGGGTCCTGTTAGCATGGACAGATGAGGAATGCAAGAAAGTTTTCCAGAATTGCTATAAGGCGCTTCCAGCGAACGGAAAAGTGATCGCTTGCGAGCCGGTGGCGCCGGAGATGACGGATGACAGCCAGAGAACAAGAGCATTGCTTGCTGGTGACATATTCATAATGACAATGTATAGAACCAAGGGGAAGCACAGGACTGAACAACAATTCAAAGAGCTTGCTACTTCTGCTGGATTTTCTCACTTTCGTGCTTTCTATATTGATCCTTACATGGCTTTGCCAAATGGTGGTGTTACGAAACCAGAGTCTCAAAGTAAAGAAAGGCTCGCAATTTTCGAATTGGCACACATGATTAGTGTTCCTATGTCACTGGTAGCCATAATCAAACTGAAAGTCCCTCAAACCATTTGGCAACAAGGTTCCAACACTCCTCTCTCCGCTTCGGAAATTATCACACGTGTGCATCCCCATGGTAGCGCTGATCCACACAATCTTCAACGCATGCTTCGCTTGCTCACAAGCTTTAACATCTTTTTTGAGCATCTCAACCCAAATGGTGAGAGGAAGTATACCCTAACTGACATTGGTAAAACCCTTGTTGATGATGATGAAGGTCTATCCTATGCCTATTACATGCTCCAGCATCATGAGGATGCTTTGATAAATACTTGGCCATTCGTGGCGGAGGCAGTGGAGGATCCAACAACGGTGCCGTTCAAGAAGGCTAACGGCGACGGAGCGATGAGCTACTACTCGAAACGGCCGAATATGATAAACTTGTTTGGCAAGGCCATGCGTAGTGTGTCCGTACCATTCATGAGGGAAATGCTAGAGAACTATGATGGATTCAATGGTGTTGAATCATTGGTTGATGTTGGTGGCAACTATGGTGATTGTTTAGAAATGATTATGCAAAGGTACCCTAATATCCGTAAGGGCATCAACTTCGATTTGCCCCATGTCGTTGCTCATGCACCACCTCTTCCAGGTTCTCTTGTTCCTATTTCATTTTTAGTTATGGACATGGCTTCATCTATATTCAAATCGGATTGGGGTGTTTGTGTTCTAGTAATGGCATTTGGATAA 1872 0.4546 MEMKMNGITTTTCESQNKARLAILELAHMMSVPMSLVAVINLKVPQAIWQGGSNAPISASQILARGGAAYDAENLQRILRLLASYNIFLEHLNSSGERKYSLTDIGKTLIDDAEGLSYAYYMLQHHQDALMRAWPLMEETVKDPTVEPFKKANGEGAISYYTKRPDVLKLAVKSLCGMSIPLMKDILDSYDGFQGVDTLVDVGGNNGISLRSIMEKYPNVRKGINFDLPDMVANAPQIPGVTHVGGDAFESVPSGDAIFIKWVLLAWTDEECKKVFQNCYKALPANGKVIACEPVAPEMTDDSQRTRALLAGDIFIMTMYRTKGKHRTEQQFKELATSAGFSHFRAFYIDPYMALPNGGVTKPESQSKERLAIFELAHMISVPMSLVAIIKLKVPQTIWQQGSNTPLSASEIITRVHPHGSADPHNLQRMLRLLTSFNIFFEHLNPNGERKYTLTDIGKTLVDDDEGLSYAYYMLQHHEDALINTWPFVAEAVEDPTTVPFKKANGDGAMSYYSKRPNMINLFGKAMRSVSVPFMREMLENYDGFNGVESLVDVGGNYGDCLEMIMQRYPNIRKGINFDLPHVVAHAPPLPGSLVPISFLVMDMASSIFKSDWGVCVLVMAFG* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2556 623 Pfam O-methyltransferase domain 489 610 IPR001077 GO:0008171
Amo20g2556 623 Pfam O-methyltransferase domain 137 342 IPR001077 GO:0008171
Amo20g2556 623 PANTHER O-METHYLTRANSFERASE 363 592 IPR016461 GO:0008168
Amo20g2556 623 PANTHER O-METHYLTRANSFERASE 11 351 IPR016461 GO:0008168
Amo20g2556 623 Gene3D Vaccinia Virus protein VP39 462 621 IPR029063 -
Amo20g2556 623 Gene3D Vaccinia Virus protein VP39 115 355 IPR029063 -
Amo20g2556 623 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 360 IPR016461 GO:0008168
Amo20g2556 623 Gene3D - 359 461 IPR036388 -
Amo20g2556 623 SUPERFAMILY "Winged helix" DNA-binding domain 367 464 IPR036390 -
Amo20g2556 623 PANTHER OS02G0823400 PROTEIN 363 592 - -
Amo20g2556 623 PANTHER OS02G0823400 PROTEIN 11 351 - -
Amo20g2556 623 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 115 351 IPR029063 -
Amo20g2556 623 Pfam Dimerisation domain 384 435 IPR012967 GO:0046983
Amo20g2556 623 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 467 609 IPR029063 -
Amo20g2556 623 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 374 623 IPR016461 GO:0008168
Amo20g2556 623 Gene3D - 6 114 IPR036388 -
Amo20g2556 623 SUPERFAMILY "Winged helix" DNA-binding domain 16 112 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2556 Amo-Chr20 119959779 119971671 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2556 364 612 Monolignol Biosynthesis Gene Families AT3G53140 54.545 1.36e-88 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2556 - - ccaj:109819366 503.056