Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo20g2548 | ATGGAACCGGGCATGAGATCCGGTGGCCCTCCTGGGGTTTTTGTGAAGAACAGGAGTTCTTCAGGATGTTTGATTGTTAGGAAGAAAGGTGATGGGRTGAGTGGTGGGGTTGGCAGCTCTTCGAGCTCCAGGAAGATGTATGAATCGAAGAAAGTGAAGAAGAGGCCCAAAGTTGAGCTGAGTAGAGATTCGGGATCAAGTGGTGATCTACCGATGCCYCCTGCTAGAAGGCTTGGTCCTGAAACCATTCGAGTATGCAATGGTTTGAACGCATTCGAGCGAGGCGTGGCTGGTGGCAGTGAAATTGTCAGGAAGAGGGACAGGTTTGAGCAGATTAGGCGTAATGGGGATGATTTATCTGAGGAGGATGGGTTGGAGAGGATGGAAAGGAAGCGCAGTAAGATTGATGCGTTTGGTTCTGATCAATATGATGATGCTATGGACGTGGACATGATGAGAAGGAGGCATTTTGAAAATAATGGGGGTGGTTTAGGAGGAGGAAGGTTTGCTGGGGCAATGCATGCTGCTAGAACTGGCATTGATAGGGAGTTTGAATCTGGTTCAAGCAGACACACTATTGATAAGAGGAAAAACTCCTACCACAGCAGGGCAACTGGCTCATACCWAGGAGATAATGTTGACCATAATAGGTTCAAGATGAACAGGGATGCAGCTCAGCGCCCTCTGCCATTGCTGAGGGAAAAGTTTAACTGTGGAGAAACTATCAGGATTCAGGGGAAAAATGGGGTTTTGAAGGTGATGGTTAAGAAGGATAAGATGGGTGGGCCACTGGAACACTATGATAATCGCAAACCTGTAGAAAGCAGACAAAGTSTGAGGGCKGAGGGGATTGCCAAGAAGAATGTTCTGATACACCCTTCATCTTACTRGGAAGCAAAACCTATTGAGAAACAAGATTTAAATGTTAGGCCAGAGAAGAAACTGTTAGCAACAAGAAAATCATCGAGTAAGGACAGTAAGGGTGATGAGCAGGATTCAGATAACAGTGACACTTCATTGAATGTAGGCGTAAAAGGCAGTGAAGCTCCCAAGTCTTCAAAGAGAGTAGCATCTGAAGATGAACAGATTCCTAAGCATGAAAAACTCCAAACTACAGCAATTAAAGAAGGAAAAATAAGGCGTGGTAGTGGCACAGAAAAGCAGAAGCTTCGAGAAAAAATCCGGGAGATGCTTCTTAATTCAGGTTGGACCATAGACTATCGCCCTCGGAGGAATAGAGACTATCTTGATGCAGTTTACATCAATCCCGCTGGTACGGCCTATTGGTCTATCATCAAGGCCTATGAGGCACTTCAGAAGCAATTGAATGATGACGACCCTGGGGCCAAGCTCAAAGGGGAGAGCTCTTCTTTTGCTCCTATTGCAGATGATGTGCTTAGTCAGTTGACAAGGAAAACTCGGAAGAAGATGGAGAAAGAGTTAAAGAAGAAGAAGAAGGAAAGAGATAATATTGAGAGTGACAGTGAAAAAGAGCGTCAATTTAAYATATCTTCCAGCATCAAGCATGACATGAATGGCARGAATAGTGAAATCAATCCAGAGAAACTAAGCTCCTTTTTAAAGCAAGGAAGTAAGTCAATGAAAACTAAAATGATTGAAAATGCTGTCAACAGTGGTAGCTCTAAAAGCCAGAACYTTGTCTCTCAACCGAATGATGGGACTGAWAAATCATTTCCAGGAAACAATCCCCATGTCTTACATGGGAGGAAAAGTAGAAAAGACGGAAGATGCACTTTGTTAATTCGTAATTCTAACATAGGTTCAYGTTCAGAATCTGATGACTTTGTTCCATATACTGGGAAAKGAACAGTGCTTTCCTGGTTGGTTGACTCAGGGGCTGTACAGTTAAGCCAAAAGGTTCAGTATCGTAGAAAGAAGCGAGTGATGCTGGAGGGATGGATCACAAGAGATGGCATTCATTGTGGCTGCTGTAGTAAAATCCTCACAGTTTCAAAYTTTGAGCTTCATGCAGGAAGTAAATTGCGCCAGCCATATCAAAACATTTATTTAGACTCTGGAGATTCTCTTCTACAGTGCCAGATTGATGCATGGAGTAGYCAAGAGAAGTCTGAGAAAATCAGTTTCCATTCAGTAGATATTGATGGTAATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTGATCTGTTGTGATAGTTGTCCATCAACATTTCATCTGAGTTGCTTAGACATACAGATGCTTCCCCCTGGTGAATGGCATTGTCCAAATTGCACCTGCAAATTTTGTGGAGTTGTCAGTGGACCTGTGAACAAAGATGAATTAACTATAAATGCWCTGCATATTTGCAACTTATGCGAGAAAAAATTTCATYAACGTTGTACAAAGGAGATGGACACCRTTCCTACTAACTCTGATTTCTCAGGGCCTTCCTTTTGCGGAAAGGGCTGCAAAGAGCTCTTTGAGCATTTGAAAAAATACCTTGGTACCAAGCATGAATTAGATGCAGGCCTCACTTGGTCTCTCATTCGTAGAACAGATGAAGACTCAGATGCAGCTAATAGGGGGATTAGCCAGAGGGTGGAATGCAATTCCAAGCTAGCTGTTGCACTCGCTGTGATGGATGAATGRTTTTTACCAGTTGTTGATAGGAGGAGTGGGATCAATATACTACATAATGTTTTATATAATACTGGGTCAAACTTCAGTCGGTTGAATTATACTGGTTTTTATACTGCTATTTTGGAGCGAGGGGATGAAATGATTTCCGCCGCATCAATCAGGTTCCGTGGGACCAAGTTAGCTGAGATGCCATTCATTGGAACTCGCCATATGTATAGGAATCAGGGGATGTGCCGCCGGCTCTTTTGTGCAATTGAATTGGTTCTTTGCTCTTTGAAGGTTGAGAAACTGGTTATTCCAGCGATTTCTGAACTCATTCATACATGGACAACAGRTTTTGGCTTCACGCATCTTGAGAAATCACTCAGACAAGAAATGAGGTCATTGAGTATGTTGGTCTTCCCTGGTATAGATATGTTGCAGAAGCTGCTAGTGGAGCAAGGAAAACTTGAGGGTTTTGAGAGAATTAAAAATAGAGATGAGGTTAATACTAATCCCAGTATGGCTAGTAGGTTGGACATGAATTCCTCAGCCCTGCAAACTCCTCATGGAAKCGATGATGCTAGTTCAAATCCTGACAATGACATAAGCAATGAATCTAGTGATGCTTCTCAAGAACAAAGCAACAAAATCTTGGTTGACAGGAATGTGTGGTCAAAATCTCATTCTGAGGATAGGTTATCTGATTCTGCTTCAGATAAATGCGTTTCATCTTCTAGTACCAGTGATGATGTGCTAGAATCGAACAATAAAATAGTGACAGCCTCTCCTGGTAATGATAAATTGCATCCTTCTGCGAAMTTTCAAAAGGACAATTGTATGAGTACTCCTCCAATAGATGCTTCAAATTGCCATGYAAATCCAGRTTTGGGTTCCGAGAATGCTTTTTCTGACCCTGATTCTGCAGAAAATATGGTTGAACCTGTTTCTYKMSGGAAATGTCACTCATACACTGATATGAATTGTGATCCCTCGGAGCATGGTATCAATCCAGCATTGGATTTGCGTGTGGGGGGTAATGCTTTGTCTTTTAGAGAGTTTGATATGAATGATGCCCATGATGAGGCTTTTGAAGCTGATCCATCAGTGAATTTGCTRGAGGAGAATAATAAACACGTGGATATCTCTTGTTCTATTCTTAATCAAGGTGGTGAGAGTTCTTTGCGAGTAAGATATGATTTGAATGATGAAAATGCTCGTGAGGATGAACAAAATTSCGACAAAGGATTTACTTCACGGGAAATGCATATGAATGATACTGAGCTAAGTGCATCTGGTGATAGTTCTGAGACTGATCCAGCATAA | 3921 | 0.419 | MEPGMRSGGPPGVFVKNRSSSGCLIVRKKGDGXSGGVGSSSSSRKMYESKKVKKRPKVELSRDSGSSGDLPMPPARRLGPETIRVCNGLNAFERGVAGGSEIVRKRDRFEQIRRNGDDLSEEDGLERMERKRSKIDAFGSDQYDDAMDVDMMRRRHFENNGGGLGGGRFAGAMHAARTGIDREFESGSSRHTIDKRKNSYHSRATGSYXGDNVDHNRFKMNRDAAQRPLPLLREKFNCGETIRIQGKNGVLKVMVKKDKMGGPLEHYDNRKPVESRQSXRAEGIAKKNVLIHPSSYXEAKPIEKQDLNVRPEKKLLATRKSSSKDSKGDEQDSDNSDTSLNVGVKGSEAPKSSKRVASEDEQIPKHEKLQTTAIKEGKIRRGSGTEKQKLREKIREMLLNSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYEALQKQLNDDDPGAKLKGESSSFAPIADDVLSQLTRKTRKKMEKELKKKKKERDNIESDSEKERQFNISSSIKHDMNGXNSEINPEKLSSFLKQGSKSMKTKMIENAVNSGSSKSQNXVSQPNDGTXKSFPGNNPHVLHGRKSRKDGRCTLLIRNSNIGSXSESDDFVPYTGKXTVLSWLVDSGAVQLSQKVQYRRKKRVMLEGWITRDGIHCGCCSKILTVSNFELHAGSKLRQPYQNIYLDSGDSLLQCQIDAWSSQEKSEKISFHSVDIDGNDPNDDTCGICGDGGDLICCDSCPSTFHLSCLDIQMLPPGEWHCPNCTCKFCGVVSGPVNKDELTINALHICNLCEKKFHXRCTKEMDTXPTNSDFSGPSFCGKGCKELFEHLKKYLGTKHELDAGLTWSLIRRTDEDSDAANRGISQRVECNSKLAVALAVMDEXFLPVVDRRSGINILHNVLYNTGSNFSRLNYTGFYTAILERGDEMISAASIRFRGTKLAEMPFIGTRHMYRNQGMCRRLFCAIELVLCSLKVEKLVIPAISELIHTWTTXFGFTHLEKSLRQEMRSLSMLVFPGIDMLQKLLVEQGKLEGFERIKNRDEVNTNPSMASRLDMNSSALQTPHGXDDASSNPDNDISNESSDASQEQSNKILVDRNVWSKSHSEDRLSDSASDKCVSSSSTSDDVLESNNKIVTASPGNDKLHPSAXFQKDNCMSTPPIDASNCHXNPXLGSENAFSDPDSAENMVEPVSXXKCHSYTDMNCDPSEHGINPALDLRVGGNALSFREFDMNDAHDEAFEADPSVNLLEENNKHVDISCSILNQGGESSLRVRYDLNDENAREDEQNXDKGFTSREMHMNDTELSASGDSSETDPA* | 1307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo20g2548 | 1306 | Coils | Coil | 467 | 494 | - | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 1267 | 1306 | - | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 1141 | 1162 | - | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 1267 | 1287 | - | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 473 | 519 | - | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 1288 | 1306 | - | - | |
| Amo20g2548 | 1306 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 705 | 799 | IPR013083 | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 1033 | 1176 | - | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 303 | 334 | - | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 1089 | 1103 | - | - | |
| Amo20g2548 | 1306 | PANTHER | ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN | 1 | 1201 | - | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 261 | 287 | - | - | |
| Amo20g2548 | 1306 | Pfam | PHD-finger | 717 | 759 | IPR019787 | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 352 | 387 | - | - | |
| Amo20g2548 | 1306 | Pfam | Tify domain binding domain | 639 | 689 | IPR032308 | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
| Amo20g2548 | 1306 | ProSitePatterns | Zinc finger PHD-type signature. | 717 | 756 | IPR019786 | - | |
| Amo20g2548 | 1306 | ProSiteProfiles | Zinc finger PHD-type profile. | 714 | 759 | IPR019787 | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 261 | 281 | - | - | |
| Amo20g2548 | 1306 | CDD | PHD2_CHD_II | 717 | 756 | - | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 301 | 387 | - | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 482 | 504 | - | - | |
| Amo20g2548 | 1306 | PANTHER | PHD FINGER FAMILY PROTEIN | 1 | 1201 | - | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 505 | 519 | - | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 538 | 565 | - | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 538 | 580 | - | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 1034 | 1088 | - | - | |
| Amo20g2548 | 1306 | SUPERFAMILY | FYVE/PHD zinc finger | 698 | 758 | IPR011011 | - | |
| Amo20g2548 | 1306 | MobiDBLite | consensus disorder prediction | 1104 | 1128 | - | - | |
| Amo20g2548 | 1306 | SMART | PHD_3 | 716 | 757 | IPR001965 | - | |
| Amo20g2548 | 1306 | SMART | PHD_3 | 758 | 816 | IPR001965 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo20g2548 | Amo-Chr20 | 119777898 | 119784703 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo20g2548 | 4 | 1075 | PHD Transcription Factor Family | AT4G14920 | 46.429 | 0.0 | 859 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Amo20g2548 | TDBD | 4.9e-22 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo20g2548 | - | - | mtr:MTR_1g103830 | 1568.13 |