Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2547 ATGGAACCGGGCATGAGATCCGATGGCCCTTCTGGGGCTTTGGTGAAGAACAYGAGATCTTCAGGGTGTTTGGTTGTTAGGAAGAAAGGTGATGGATTGAGTGGTGGGGTTGGTAGTTCTTTCAGCTCCAGGAAGRTGAATGCATCAAAGAAAGGGAAGAAGAGGCCCAAGGTTGAGTTAAGTAGTAGCGATTCGGAATCGAGTCAGGAGCTATTGATGCCARCTTCTAGAGGGCTTGGTCCTGAGACCATTCGAGTATGCAATGGTTTGACAGCTGTTAAGCGGGACGAGGCTGGTGATGGTGGAACTGGAAGGAAGCGGGAGAGGTTTGAGGACYTTAGTCATAACGGTGATGAGATGGGGGAGGGAAATGGTTCAGAGAGGAGGGAAAAGAAACTTAGRAAGATTGATGTGTTTGATTTCGARGAATACGATGCTATGGATGCAGACATGATGAGAAGGAGCCATGTAGATAGCAATGGGGGCGGCTTTGGAGGGGAAAGGCTTGGGGGAGCAATGCATGCTGCRAGAGGTGGCACTGATAGGGAATTCAAAACTGGTTCAAGCAGACACACCCTTAATAAGAGAAAGAACTCCCATTGTGATAAGGCAAGTCACTTGCACCCAAGAGATAGTAAATTAAAGAAGTGGGATGCAGCTCAGCATCCTCAGCCCYTGCCGAAGGAGAAGTTTAAMTCTGATGAATCCATTAGGGTTCAAGGGAAAAATGGTGTTTTAAAGGTGATGGTTAATAAGAAGATGTGTAAGCCATCAAAGCACGTTGATAATCGCAAACATGTAGAAGGGCAACGAAGTTTGAGGGCTGAGGGCATTGCCAAGAAGAATGTTCTGATCCATCCTTCATCTTGCTTGGAAAAAAYKCCTGTTAAGAAACAAGGTTTACATGCTAGGACAGAGAAGAAATTGGRAGCAAGAAGAAAATCTTTGTCAAGTAACGACAWTAAGGGTGATGACCAGGATTCAGATAACAGTGGCACATCATTGAATGTGGGAGTGAAGTGCATTAAAGCTTTCAAGTCTTTAAAGAGGGGGACCTCGGACGATGAACAGACTCCTAAGCATGAAAAGACCCCAACCACAGCAGGAACTAAAAAGGAGAAAATAAAGCATGAAAAGACCCCAACTACAGCAGGAACTAAAAAGGAGAAAATAAGGCGTGGTAGTGGCACAGAAAAGCAGAAGCTACGAGAACAGATACGGGAGATGCTTCTTAATGCAGGTTGGACCATAGACTATCGRCCTCGGAGGAAGAGAGACTATCTTGATGCAGTTTACATTAATCCTGGGGGTACAGCCTATTGGTCCATCATCAAGGCCTATGAGGCGRTTCAGAAGCAATTGAGTGCTGACGACCCTGGGGCCAAGCCCAATGGGGAGTGCTCTTCTTTTGCTCGTATCAWAGATGATGTGCTTAGTCAGTTAACAAGGAATACTCAGAAGAAGATGGAGAGAGAACTAAAGAAGAAGAAGAAGAAACAGAAGAAGGAAAGAGATGATAGTGAGAGTGATAGTGGAAAAGAACCTCGCATTAYGAGATCTTTAAGCAACAAGCGTGATATGAATGGCATGGAAAGTGATAGTGATGAAGAGAAATTAAGCTCCTTTTTAAAGCGGGAGCGTAAGTCAATGAAAAATAAAATGATTGAAAATACTGTTAACAGTTGTAGATCTACAAGCAAGAAAGCTGACCTTCACACAGATGAAGGAACTGAAAAATCACTTTTAGGAAATGATCCTCATCAACTACATGGGAGGAAAAGTAAGAAACATGGAAGGTGCACTTTATTGGTTCGTAATTCCAACATAGGGTCAAATTCAGATTCTGATGACTATGTTCCATATATGGGCAAACGAACGGTGCTTTCCTGGTTGYTTGACTCTGGAGCTGTACAGTTAAGCCAAAAGGTTCAGTATCGTAGAAGGAAACGTGTAATGCAGGAGGGATGGGTCACCAGGGATGGGATTCARTGTAGTTGCTGTAGTAAAATACTCACTGTTTCCAAGTTTGGGCTTCATGCAGGAAGTAAATTGCGCCAGCCATATCAAAACATATATTTGGATTCTGGAGATTCTCTTCTACAGTGCCAGATAGATGCATGGAATAAACAAGAGAATTCTGAGAAAATTGCTTTCCATGCAGTAGATATTGATGGTAATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTGATCTGTTGTGATGGTTGTCCATCAACGTTTCATCTGAGTTGCTTGAATATACAGATGCTCCCCCCCGGTGAATGGCATTGTCCGAATTGCACATGCAAATTTTGTGGAGTAGTCCGTGGTCCTGTAAACAAAGAAGATGAATCAACTTTAAATGCCCTACATAGATGCAACTTATGCGATAAAAAATTTCATGAATGTTGTGCTAAGGAGATGAAAACCCTTCCTACTAACTCCGATATGTCAAGCCCTTCCTTTTGCGGAAGGGACTGCAAAGAGCTTTCTGAGCACTTGAAGAAATACCTTGGTACRAGGCATGAAATAGATGGAGGCTTCACATGGTCTCTCATTCATAGAACAGAAGARGACTCYGAGGCATCTAGTAGGGGAATTATGCAGAGGGTTGAATGGAACTCCAAGRTAGCSGTTGCACTGACTGTGATGYATGAATGCTTTTTGCCAGTTATTGATAGGAGAAGTGGGGTCAATTTAATACATAATGTTTTATATAATAGTGGGTCAAACTTCAGCCGGTTGAATTACACTGGCTTTTATACTGCGATTTTGGAGCAAGGCGATGAAATAATTTCTGCAGCTTCTATCAGGTTCCATGGGACCAAGTTAGCAGAGATGCCATTCATTGGAACTCGCCATATGTATAGGCATCAGGGGATGTTGCGCAGGCTTTTTTCTGCCATTGAATTGGCCCTTTGCTCTCTGAAGGTTGAGAAATTGGTTATTCCAGCAATCTCTGAACTGATTCATACATGGACAACAGTTTTTGGCTTCATGCATCTTGAGGAATCACTCAGACAGGAAATGAGGTCATTGAATATGTTGGTCTTCCCRGGTATAGATATGTTGGAGAAAGTGCTAYCCAAACAYGGAAAACTTGATGGTGTTGAGAAAATGGAAACTAGAGATGAATTTGTTACTASGCCTAATATGGCTGGTAAGTTGGATATGAATTCCTCAGCTCTGGAAGATCCTGAACGYAGTGATCATGCTAATTCAAATCCTGACAATGAGATAAACGACGACTCTAGTGATGCTTCTCAAGAACAGGATAATCACATTTTGGTTGACAGCACCAAYTCTCATTCTGCAGATAGATCATCTGATTTTGTTTCAAATAAATGTGTTTCTCCTTCTAGTACCAGGGATGATGTGCTAGAAACAAACAATAAAYCAGTGACAGCTTTTCCTGGTAATAATAAATTGCATCCCTCTGTGAAATGTCAAAATCACACTTCTTTGAGCAGTCCTCCATTAGTTTCTCCATCTCCAGATTGCCATGAACTTGCTGCTTTGTATTCGGTGAATGTATGTTCGGACCCTGATTCTGCGAAAAATCTGGCACAACCTGTTTCTGATGGACAATGTCACACGCACACTGATGACGTTAATCCAGGGTTGGATTCTCAAGTGGGAGATAATGCTTTGTRTTCTAAAGAGGTTGATATGAATGATGCCCGTGATGAGGTTCTTGAAGGTGATCAATCAGTGAATTTATCTCAGGGTAAAATTACGAAGGAGAAAAATGAAGTCGTGGATGTGTCTGGTTTTGTTCCCAATCATGCTGATGAGAGTTCTTTGCAAGTGAAATCTGATTTGAAGGATGAAATTGTATTAGAGGGAGAAAAGAATTTGGACAAAGAGGTTGCATCACGTGAAATGTGTGTGGATGAAACTAGCCCAAGGGCATCTGGTGCTAGTTCTMAAACTGATCCAGCTTAA 3960 0.4192 MEPGMRSDGPSGALVKNXRSSGCLVVRKKGDGLSGGVGSSFSSRKXNASKKGKKRPKVELSSSDSESSQELLMPXSRGLGPETIRVCNGLTAVKRDEAGDGGTGRKRERFEDXSHNGDEMGEGNGSERREKKLRKIDVFDFEEYDAMDADMMRRSHVDSNGGGFGGERLGGAMHAARGGTDREFKTGSSRHTLNKRKNSHCDKASHLHPRDSKLKKWDAAQHPQPLPKEKFXSDESIRVQGKNGVLKVMVNKKMCKPSKHVDNRKHVEGQRSLRAEGIAKKNVLIHPSSCLEKXPVKKQGLHARTEKKLXARRKSLSSNDXKGDDQDSDNSGTSLNVGVKCIKAFKSLKRGTSDDEQTPKHEKTPTTAGTKKEKIKHEKTPTTAGTKKEKIRRGSGTEKQKLREQIREMLLNAGWTIDYRPRRKRDYLDAVYINPGGTAYWSIIKAYEAXQKQLSADDPGAKPNGECSSFARIXDDVLSQLTRNTQKKMERELKKKKKKQKKERDDSESDSGKEPRIXRSLSNKRDMNGMESDSDEEKLSSFLKRERKSMKNKMIENTVNSCRSTSKKADLHTDEGTEKSLLGNDPHQLHGRKSKKHGRCTLLVRNSNIGSNSDSDDYVPYMGKRTVLSWLXDSGAVQLSQKVQYRRRKRVMQEGWVTRDGIQCSCCSKILTVSKFGLHAGSKLRQPYQNIYLDSGDSLLQCQIDAWNKQENSEKIAFHAVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHLSCLNIQMLPPGEWHCPNCTCKFCGVVRGPVNKEDESTLNALHRCNLCDKKFHECCAKEMKTLPTNSDMSSPSFCGRDCKELSEHLKKYLGTRHEIDGGFTWSLIHRTEEDSEASSRGIMQRVEWNSKXAVALTVMXECFLPVIDRRSGVNLIHNVLYNSGSNFSRLNYTGFYTAILEQGDEIISAASIRFHGTKLAEMPFIGTRHMYRHQGMLRRLFSAIELALCSLKVEKLVIPAISELIHTWTTVFGFMHLEESLRQEMRSLNMLVFPGIDMLEKVLXKHGKLDGVEKMETRDEFVTXPNMAGKLDMNSSALEDPERSDHANSNPDNEINDDSSDASQEQDNHILVDSTNSHSADRSSDFVSNKCVSPSSTRDDVLETNNKXVTAFPGNNKLHPSVKCQNHTSLSSPPLVSPSPDCHELAALYSVNVCSDPDSAKNLAQPVSDGQCHTHTDDVNPGLDSQVGDNALXSKEVDMNDARDEVLEGDQSVNLSQGKITKEKNEVVDVSGFVPNHADESSLQVKSDLKDEIVLEGEKNLDKEVASREMCVDETSPRASGASSXTDPA* 1320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2547 1319 MobiDBLite consensus disorder prediction 499 545 - -
Amo20g2547 1319 MobiDBLite consensus disorder prediction 1 131 - -
Amo20g2547 1319 Coils Coil 483 510 - -
Amo20g2547 1319 MobiDBLite consensus disorder prediction 297 327 - -
Amo20g2547 1319 MobiDBLite consensus disorder prediction 1066 1082 - -
Amo20g2547 1319 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1261 - -
Amo20g2547 1319 ProSitePatterns Zinc finger PHD-type signature. 733 772 IPR019786 -
Amo20g2547 1319 MobiDBLite consensus disorder prediction 98 131 - -
Amo20g2547 1319 MobiDBLite consensus disorder prediction 567 589 - -
Amo20g2547 1319 MobiDBLite consensus disorder prediction 561 594 - -
Amo20g2547 1319 MobiDBLite consensus disorder prediction 1295 1319 - -
Amo20g2547 1319 SUPERFAMILY FYVE/PHD zinc finger 722 781 IPR011011 -
Amo20g2547 1319 MobiDBLite consensus disorder prediction 154 235 - -
Amo20g2547 1319 ProSiteProfiles Zinc finger PHD-type profile. 730 775 IPR019787 -
Amo20g2547 1319 SMART PHD_3 732 773 IPR001965 -
Amo20g2547 1319 SMART PHD_3 774 833 IPR001965 -
Amo20g2547 1319 Pfam PHD-finger 733 775 IPR019787 -
Amo20g2547 1319 CDD PHD2_CHD_II 733 772 - -
Amo20g2547 1319 MobiDBLite consensus disorder prediction 295 333 - -
Amo20g2547 1319 Pfam Tify domain binding domain 655 705 IPR032308 -
Amo20g2547 1319 MobiDBLite consensus disorder prediction 1055 1130 - -
Amo20g2547 1319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 722 849 IPR013083 -
Amo20g2547 1319 MobiDBLite consensus disorder prediction 350 395 - -
Amo20g2547 1319 MobiDBLite consensus disorder prediction 198 218 - -
Amo20g2547 1319 MobiDBLite consensus disorder prediction 1095 1130 - -
Amo20g2547 1319 MobiDBLite consensus disorder prediction 481 545 - -
Amo20g2547 1319 PANTHER PHD FINGER FAMILY PROTEIN 1 1261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2547 Amo-Chr20 119770702 119777536 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2547 1 1033 PHD Transcription Factor Family AT4G14920 46.059 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo20g2547 TDBD 2.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2547 - - adu:107466994 1820.05