Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2539 ATGGAAACAAACCACCGCAACACTATTTGCACATTCACAGATATTGATATCACTAATTGGAACAATAATGATCTTCCTCATCATGATTATGATGAAAATAAGAACATGGAAACAAGACAAGAAGAGGATCATAACAACCTCACTACTCTCAATGATAACCAAATTCCTCTTATGTCCTGGCCCAACCTTCAACAACAAAGACCAGCAATACCCTCACCGTCATCCTCAACTTCTAGAACCTTCTTTAGTGACATAATGGAGAACCAAGTGCAAGAAGAGGAAGAAGAAGAAGAAGAAGACGAAGAGCCTGAAGAAGAGTTAGGAGTCATGAAGGAGATGATGTACAGGATCGCCGCTATGCAGCCGGTGGACATCGACCCGGCTAGCGTTCGAAAGCCGAGGAGGCGAAACGTGCGAATAAGCGACGACCCTCAGAGCGTGGCAGCGCGTCACAGAAGGGAGAGGATCAGTGAGAGGATCCGAATCCTTCAGAGGTTAGTTCCAGGTGGCACCAAAATGGACACCGCTTCCATGCTCGACGAAGCCGTTCGATATGTTAAGTTCTTGAAYCGCCAAYTCAGGTTCCTCGAATCAAATCCAAATCAACTACCACCTAATTGGCCTTTTGCACCACTACTTAKTATTAATAATWTGCTTCACGCTCCTTCTGCTGCTGCCGCCACTTCCATGCCACCGCCACCGCCGCCGCCGGGGCTACCCGGATTTGGAACCCTAAGCAGCCATGGCCATCATGATTAG 759 0.473 METNHRNTICTFTDIDITNWNNNDLPHHDYDENKNMETRQEEDHNNLTTLNDNQIPLMSWPNLQQQRPAIPSPSSSTSRTFFSDIMENQVQEEEEEEEEDEEPEEELGVMKEMMYRIAAMQPVDIDPASVRKPRRRNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAVRYVKFLNRQXRFLESNPNQLPPNWPFAPLLXINNXLHAPSAAAATSMPPPPPPPGLPGFGTLSSHGHHD* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2539 252 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 27 209 IPR045843 GO:0003700|GO:0006355
Amo20g2539 252 Pfam Helix-loop-helix DNA-binding domain 150 189 IPR011598 GO:0046983
Amo20g2539 252 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 27 209 - -
Amo20g2539 252 Gene3D - 143 208 IPR036638 GO:0046983
Amo20g2539 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 205 IPR036638 GO:0046983
Amo20g2539 252 SMART finulus 146 195 IPR011598 GO:0046983
Amo20g2539 252 MobiDBLite consensus disorder prediction 65 107 - -
Amo20g2539 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Amo20g2539 252 MobiDBLite consensus disorder prediction 224 252 - -
Amo20g2539 252 MobiDBLite consensus disorder prediction 88 107 - -
Amo20g2539 252 MobiDBLite consensus disorder prediction 227 241 - -
Amo20g2539 252 MobiDBLite consensus disorder prediction 65 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2539 Amo-Chr20 119188952 119189710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2539 107 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 83.838 6.28e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo20g2539 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2539 - - aip:107620984 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2539 20 119188952 119189710 Amo20g2539 20 119188952 119189710 ECH