Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2536 ATGAGTGAAAGTGGCAGGAAACGCTCTTCAAAGTGGGATACAAGAGATGATCCTGATTTTGGACCTGATAGTAAGCACTTGCGTTCTGGATGGTCCTCTGGAGATGTTGCTGGCAGCAATAACTCAAAATGGTCTTATATGGAAGGAAATGACAAGATGAAACCTCGCATGAGTAAGGAACCTTTTTCTGGAGGCAGGGGTTCAAATAAAGATGATATTATGAATAAAGACTATAGATGTTTGGATGCAAAAATGGAGTGGGAGGCGGATGCAAGTTACAGCAGGAGACGCAGTCCATCCCCAAAAAGTGGTTGGAGCAGGTCGGGCAGGAGTAGTAGAAGCAGAAGCCCTCCACATGGTTTCAAGTGGGATTCAGGAGCCAATGACAGAAATAGAACGAGGGCTGCAGAATCAAAGCAAATATGCAGAGATTTTGCTGTTGGAAAATGTAGAAGAGGAAGCCATTGCTATTTTCTTCACCATGATGACCAAAATTATGAGGATATTCGGGAAAGTAAAAACCGGGAAGATGGAGCTCCAAGATATTCTGCTTCACATGAGAGCAGGGAACATACTCTTAGGAGTAGATCCACTGAAGCTTGTGTTCATTTTGCAAAAGGCAGATGTAGAATGGGAGCATCATGCAAYTATGTGCATCATAACAATTCTGATGAATATGGTAAGGGTACTCTGGATGAATTAACTAGAGAAAGGGAAAATGATGGAAGGCGCAGAGATAATTCTTTTGAGCAGGGTGGTGGCCACATYCCAAGCCGCAGTGGTGATACCCTTTGCAAATTTTTTGCTAATGGAAATTGTCGTAATGGTAAGCATTGTAGGTTTTCRCATGATAGGCAAGACAGAAGCTTAAGGGATGATAGATGGGGAAGCAATCTTTCTGGAGACCATCAGACCTTGGATAGACCAAAATTGAGTGATTCAGCTAGTCCTACTAGAAGGCTTAGAAGTGATAGATGGGGCACAGATGGCATTATGGCTGATAAGGATAAAGTATGGGACAGTCCAAACCGGAATGATATAGCTACCTATGATTCAGCAAAGTTGGTTGAAGAAAAACCTGGAAATATAGGTGCCACTGAGCATGAACAAACTGTATGGCCTGTGAAGGAAGGATGGGGTCATAGTTTAGACCAGAGCAGTGTGCAGGGTGAACCACCATTTTTAAGTGATAAGAAGGAAGCTGACCATTGGATAGCAGACAATGCTGGTGCCAGCATTCCCGTTTCCCAGTCCGTAGCTGCAGACATCTGGCCTGGGGACGCAAAAATGTCTCCTGATTGGAATTATAGAGCAGGATCTTCCACCCGTACGGAAGTAGAGCATGGACAGAACGATCGTGGGTTAACTCAAGGAAGTACATATCCAGCCACCACTGAACATGACAGAATACATGTTCCAGGGCAAGGTTTTAATCAGAATGTGCAAAATGTTAATCTTTTGCATTTGCCAAGCTGCCATGCAGTTGGACAAAATCAAGTGACAGTTCCCATTCTTCCTTCAAGAGCAGGAATTCCTGAAGGTATGCAAAAGCAAGAAGTCTGTGTTGAGAAAAAGTACWCTGCTGAGCCAAATATCACAGGTGAAGGCTCATCACAGATTAGTTCAAGTAATCCTTCAACACAGGACACAGTAAGCAAAGAACAGCTTGCTCAACTTTCCAATCTCTCAGCCTCTCTTGCTCACATCCTTGGATCTGGTCAGCAGCTGCCACAACTTTATGCTGCCTTAAATTCTCATAATACAAATGACACTCCCTCCTTAGCCAACACGGAAGTGCCTGCTATGCCTGTTTCCAATACGTATGTCAAGCCAGATCCTGCTGTTGGATTTGTAAAGCAGTATGATCCAATGAGTGATAGCGTTGACCTAAATGATGCTGATGCAAGTGGAATCTGCCCAGTRATTTCTCCAAGTAAAAAAAGTGCAAATATAGAAATTTCATCACTGTTGTCTAACACTGGGAAACAAAATTGTGGTGATACTTCTAAGGCCCCCTCCTCAGAAGAYCAACCTGCCAAGAATGAACATCTGACCCAATTGCAGCCAGGTCAAAACATTGAGATACAGAAGGAAACCAATGAAGCGGTAGCTGATGATAAGCCAAATCCTCAAGATGATCATAAAATTACAAAAGAGAATGGTCCTTCAGAAAACATAGACCACAATGGTGTTGAGGCCAATAAAAGCAAGGATGTGAAGGGGATTCGTGCTTTCAAATTTTCATTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACTTGGAAAGAAGGAAAAATCACTAAAGATGATTATAAAACAATTGTGAAGAAGGTTGTAGATAAAGTAACCGGTACCATGCAGGGAGCCCARATTCCTCAGACTCAAGAGAAAATTGACCATTATTTGTCGTTTTCGAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGGTTCACAAGGCCTAG 2472 0.4256 MSESGRKRSSKWDTRDDPDFGPDSKHLRSGWSSGDVAGSNNSKWSYMEGNDKMKPRMSKEPFSGGRGSNKDDIMNKDYRCLDAKMEWEADASYSRRRSPSPKSGWSRSGRSSRSRSPPHGFKWDSGANDRNRTRAAESKQICRDFAVGKCRRGSHCYFLHHDDQNYEDIRESKNREDGAPRYSASHESREHTLRSRSTEACVHFAKGRCRMGASCNYVHHNNSDEYGKGTLDELTRERENDGRRRDNSFEQGGGHIPSRSGDTLCKFFANGNCRNGKHCRFSHDRQDRSLRDDRWGSNLSGDHQTLDRPKLSDSASPTRRLRSDRWGTDGIMADKDKVWDSPNRNDIATYDSAKLVEEKPGNIGATEHEQTVWPVKEGWGHSLDQSSVQGEPPFLSDKKEADHWIADNAGASIPVSQSVAADIWPGDAKMSPDWNYRAGSSTRTEVEHGQNDRGLTQGSTYPATTEHDRIHVPGQGFNQNVQNVNLLHLPSCHAVGQNQVTVPILPSRAGIPEGMQKQEVCVEKKYXAEPNITGEGSSQISSSNPSTQDTVSKEQLAQLSNLSASLAHILGSGQQLPQLYAALNSHNTNDTPSLANTEVPAMPVSNTYVKPDPAVGFVKQYDPMSDSVDLNDADASGICPVISPSKKSANIEISSLLSNTGKQNCGDTSKAPSSEDQPAKNEHLTQLQPGQNIEIQKETNEAVADDKPNPQDDHKITKENGPSENIDHNGVEANKSKDVKGIRAFKFSLVEFVKELLKPTWKEGKITKDDYKTIVKKVVDKVTGTMQGAQIPQTQEKIDHYLSFSKPKLNKLVQAYVEKVHKA* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2536 823 Pfam RNA-binding, Nab2-type zinc finger 200 219 - -
Amo20g2536 823 Pfam RNA-binding, Nab2-type zinc finger 141 160 - -
Amo20g2536 823 MobiDBLite consensus disorder prediction 306 325 - -
Amo20g2536 823 MobiDBLite consensus disorder prediction 226 250 - -
Amo20g2536 823 Gene3D - 135 223 - -
Amo20g2536 823 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 821 - -
Amo20g2536 823 MobiDBLite consensus disorder prediction 96 115 - -
Amo20g2536 823 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 821 - -
Amo20g2536 823 MobiDBLite consensus disorder prediction 169 191 - -
Amo20g2536 823 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Amo20g2536 823 MobiDBLite consensus disorder prediction 290 325 - -
Amo20g2536 823 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872
Amo20g2536 823 MobiDBLite consensus disorder prediction 226 261 - -
Amo20g2536 823 MobiDBLite consensus disorder prediction 659 683 - -
Amo20g2536 823 MobiDBLite consensus disorder prediction 435 464 - -
Amo20g2536 823 MobiDBLite consensus disorder prediction 531 550 - -
Amo20g2536 823 MobiDBLite consensus disorder prediction 33 47 - -
Amo20g2536 823 MobiDBLite consensus disorder prediction 90 132 - -
Amo20g2536 823 MobiDBLite consensus disorder prediction 1 75 - -
Amo20g2536 823 Gene3D - 254 294 - -
Amo20g2536 823 ProSiteProfiles Zinc finger C3H1-type profile. 195 222 IPR000571 GO:0046872
Amo20g2536 823 MobiDBLite consensus disorder prediction 532 550 - -
Amo20g2536 823 MobiDBLite consensus disorder prediction 699 722 - -
Amo20g2536 823 MobiDBLite consensus disorder prediction 1 24 - -
Amo20g2536 823 MobiDBLite consensus disorder prediction 434 476 - -
Amo20g2536 823 SMART c3hfinal6 259 285 IPR000571 GO:0046872
Amo20g2536 823 SMART c3hfinal6 137 162 IPR000571 GO:0046872
Amo20g2536 823 SMART c3hfinal6 195 221 IPR000571 GO:0046872
Amo20g2536 823 SUPERFAMILY CCCH zinc finger 262 284 IPR036855 GO:0046872
Amo20g2536 823 MobiDBLite consensus disorder prediction 698 732 - -
Amo20g2536 823 Pfam CCCH-type zinc finger 264 284 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2536 Amo-Chr20 119109844 119116468 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo20g2536 zf-CCCH_4 7.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2536 - K22909 gmx:100783856 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2536 20 119109844 119116468 Amo20g2536 20 119109844 119116468 ECH
Amo13g3762 13 126974741 126980896 Amo20g2536 20 119109844 119116468 ECH
Amo10g2003 10 72605373 72612241 Amo20g2536 20 119109844 119116468 hybridization