Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2533 ATGAAGAGAAAACCTCATAAACCCGTWATATTGAGCTTCTTGTTCCCAATAACGAGATCCACCATTCTCATCCTCTCCATGGCTTCCCTCCTCTCCCTCTCGCTCTGCATCTTCCTCTCCCTCTTTCTTTCATCCTCCAACGCCCAACTTACCCCCTCCCTCCCTGTCCTTCAAGCATGCAAGGCCACGCGCTTCCCTCTCATATGCCACACCACGCTCAGTTCCRTGACCCAAACAAATCCTGACCCAACCCCAGTCGAGCTCGTCCARTCCGCCATTAATTCSTCCTACACCAAACTCCACGATGCCATCACCATGATCTCCTCCCTCTACGAGGACTCCATCGCCAGCAACCGCACCCGCGCCACCGCGGCCAAGACCTGCATTCAGATCCTCCGCTACTCCCGCCGCCGCACTTTCCTCGCCGCCGACGCCATCCCCCGGAATGCCACAAAAGACGCCCGCGCATGGCTCAGCGCCTCCTTGGCCTACCAGTACGGTTGCTGGTCCAGCCTCAAGTACGCCAACGACACCCTCTCCGTCGCGGAGGCGATGGTTTTTGTAGATTCCCTTACCTACATCACCAGCAACGCCCTCAGCATGGTCGCATCCTACGACCTCTTCGGCAACGACACCGCTTCATGGAGGCCGCCGTTAACGGAGCGTAACGGCTTCTGGGAGCCACCGGTCGCTTCGGGAGGGTTCGGATCGGGATATAAATTAGGAGTGCCGTCGAAATTGACGCCAGACGCTACCGTTTGCAAGAACGGGGATGGTTGTTACAGGACGGTGCAGGAGGCGGTTCACGCGGCGCCGGATAACCTTAAGGTCGGAGAACGGATGTTCGTGATTTACATAAAGGAAGGGGTATATGAAGAGAAGGTCAGGGTTCCGCCGAAGAAGAAGAATGTGGTGTTCTTGGGCGATGGAATGGGCAAAACCATCATCACCGGTTCCCGCAGCGTTGGGCTTATGCCTGGAATGTCAACCTATCACTCAGCCACCGTCGGGGTTCTTGGGGATGGATTCATGGCCAAGGATCTCACCATCCAGAACACGGCTGGTGCTGAYGCGCACCAGGCGGTGGCCTTCCGATCGGACAGTGATCTTTCCGTCATTGAGAATTGYGAGTTCATTGGCAACCARGACACACTMTATGCTCAAACCYTGCGCCAGTTTTACAAAAATTGCCGGATCATTGGCAATGTGGATTTCATCTTCGGAAAYTCGGCGTCAATCTTCCAAGACTGYGAAATCCTGGTCAAGCCGAGGATAGTCGATCCGGAGAAGGGAGAGACCAATGCCATCACGGCACAGGGCAGGACGGACCCTGGTCAGTCGACCGGCTTTGTTTTCTGGAAYTGCTCGTTTAATGGCACTGAGGAATATATGGCATTGTATCACAGCAAGCCTCAAGCACACAAGAACTATCTAGGTAGGCCATGGAAGGAGTATGCTAGGACAGTATTCATTMATTCAACCTTGGAAGCCCTGATTGCACCGGAGGGTTGGATGCCTTGGAGCGGGGACTTTGCGCTGTTGACGCTATACTATGGAGAATTCGAGAACTCAGGACCCGGTTCGRATTTGGCTAAAAGAGTTCCATGGAGCAGCAGGATCCCCAGTGAGCATGTGGATACTTACTCAGCTCAGAATTTCATTCAAGGAACTCATTGGATTCCGTCATCTCTGTGA 1695 0.5363 MKRKPHKPVILSFLFPITRSTILILSMASLLSLSLCIFLSLFLSSSNAQLTPSLPVLQACKATRFPLICHTTLSSXTQTNPDPTPVELVQSAINSSYTKLHDAITMISSLYEDSIASNRTRATAAKTCIQILRYSRRRTFLAADAIPRNATKDARAWLSASLAYQYGCWSSLKYANDTLSVAEAMVFVDSLTYITSNALSMVASYDLFGNDTASWRPPLTERNGFWEPPVASGGFGSGYKLGVPSKLTPDATVCKNGDGCYRTVQEAVHAAPDNLKVGERMFVIYIKEGVYEEKVRVPPKKKNVVFLGDGMGKTIITGSRSVGLMPGMSTYHSATVGVLGDGFMAKDLTIQNTAGADAHQAVAFRSDSDLSVIENCEFIGNQDTLYAQTLRQFYKNCRIIGNVDFIFGNSASIFQDCEILVKPRIVDPEKGETNAITAQGRTDPGQSTGFVFWNCSFNGTEEYMALYHSKPQAHKNYLGRPWKEYARTVFIXSTLEALIAPEGWMPWSGDFALLTLYYGEFENSGPGSXLAKRVPWSSRIPSEHVDTYSAQNFIQGTHWIPSSL* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2533 564 SUPERFAMILY Pectin lyase-like 248 562 IPR011050 -
Amo20g2533 564 Pfam Plant invertase/pectin methylesterase inhibitor 58 201 IPR006501 GO:0004857
Amo20g2533 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 202 IPR035513 -
Amo20g2533 564 SMART PMEI_2 51 201 IPR006501 GO:0004857
Amo20g2533 564 CDD PMEI-like_3 59 206 - -
Amo20g2533 564 PANTHER PECTINESTERASE 38 562 - -
Amo20g2533 564 TIGRFAM PME_inhib: pectinesterase inhibitor domain 27 202 IPR006501 GO:0004857
Amo20g2533 564 Pfam Pectinesterase 250 556 IPR000070 GO:0030599|GO:0042545
Amo20g2533 564 Gene3D - 244 564 IPR012334 -
Amo20g2533 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 205 IPR035513 -
Amo20g2533 564 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 38 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2533 Amo-Chr20 119038297 119040722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2533 59 559 Carbohydrate Esterase AT5G09760 62.227 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2533 - - gmx:100802102 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2533 20 119038297 119040722 Amo20g2533 20 119038297 119040722 ECH
Amo10g2007 10 72824321 72825996 Amo20g2533 20 119038297 119040722 hybridization