Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2529 ATGGCTCCTGCCACCTCACCGGCGCGGTCGGCCAAGAGGCTCATCGGCTTTAGCCGCCGGACGCAGGCAATTCACCCGCACGGTCAGCAGTCGCCGTGCGGGCCGCCGGCGAAGAAGTACAAGTCGATGACGGACATAATGGCGAGGGCGCCGTACGCCGTCGTGGAGCGCGAAGATTACGGCGACCTCAGCTGCGAGCAATGCGGCTCCGGCGAGCGGCCGGAGGAGCTGCTTCTCTGCGACAAATGCGACAGAGGGTTCCACATGAAATGCGCGAGGCCTATCGTCGTTAGGGTTCCTATTGGATCCTGGCTTTGCCCTGAATGCGTTGGAAGCAACAACAGACAGAGAAGAATAAAAAGCTTCTCGCAGCGTAAGTTAATTGATTTCTTCGGGATTCAGAGGAGCGACAATGATCACGTTAGAGCTGCTTCTTCTCAAGATGCTAAGAAGCGTCGAAGACGATCACGCCCTCTGGTTATGCACAAGAGAAGGAGGAGATTATTACCATTTATTCCTTCAGAAGATTCGAACCAAAGAAATAAACAGATGAATTCACTTGCTACTGCTTTATCAGCATTGCATATGGATTTTAGCGATGACCTCAGATACTTGCCTGGAATGGCTCCTAGATCTGCTAATCAAGCCATATTAGAAGATGGTGGCATGCAGATTCTTTCAAAGGAAGATATGGAGACCTTGGAACACTGCAGAGCTATGTCTAGAAGAGGCGAATGTGCCCCCTTTCTAATTGTTTATGATGCACGCGAAGGGTACCAATATTTTGCTTGTCATCATAATTTAGGACATCAGTTTACCTTAATATTAATAGGACTTTTCTTGAAATTTCCCAATAGCTATACTGTGGTGGCTGATGCTCCAATCAAGGATTTGACATTTATTGCGGAATACACGGGCGATGTGGATTACCTTAAGAATCGAGAAAGTGATGATTGTGACAGTATGATGACCCTTCTTTTATCAAGTGATCATTCTCAAAGTCTTGTCATCTGTGCTGATAAACGCGGAAACATTGCTAGGTTTATTAATGGCATCAACAATCATACTCCGGAAGGTAGGAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAACGGTGAATGCAGGGTCCTTTTGGTTGCTACTCGTGATATTTCTAAGGGCGAGAGGCTTTATTATGATTATAATGGTTATGAGCATGAATACCCCACACATCATTTTGTCTAA 1230 0.4634 MAPATSPARSAKRLIGFSRRTQAIHPHGQQSPCGPPAKKYKSMTDIMARAPYAVVEREDYGDLSCEQCGSGERPEELLLCDKCDRGFHMKCARPIVVRVPIGSWLCPECVGSNNRQRRIKSFSQRKLIDFFGIQRSDNDHVRAASSQDAKKRRRRSRPLVMHKRRRRLLPFIPSEDSNQRNKQMNSLATALSALHMDFSDDLRYLPGMAPRSANQAILEDGGMQILSKEDMETLEHCRAMSRRGECAPFLIVYDAREGYQYFACHHNLGHQFTLILIGLFLKFPNSYTVVADAPIKDLTFIAEYTGDVDYLKNRESDDCDSMMTLLLSSDHSQSLVICADKRGNIARFINGINNHTPEGRKKQNCKCVRYNVNGECRVLLVATRDISKGERLYYDYNGYEHEYPTHHFV* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2529 409 MobiDBLite consensus disorder prediction 139 159 - -
Amo20g2529 409 Pfam PHD-finger 65 110 IPR019787 -
Amo20g2529 409 ProSiteProfiles Zinc finger PHD-type profile. 62 112 IPR019787 -
Amo20g2529 409 PANTHER HISTONE ACETYLTRANSFERASE 8 407 - -
Amo20g2529 409 Pfam SET domain 331 397 IPR001214 GO:0005515
Amo20g2529 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 125 IPR013083 -
Amo20g2529 409 ProSitePatterns Zinc finger PHD-type signature. 65 109 IPR019786 -
Amo20g2529 409 ProSiteProfiles SET domain profile. 273 397 IPR001214 GO:0005515
Amo20g2529 409 CDD SET_ATXR5_6-like 244 409 - -
Amo20g2529 409 Gene3D SET domain 152 409 IPR046341 -
Amo20g2529 409 SUPERFAMILY FYVE/PHD zinc finger 53 116 IPR011011 -
Amo20g2529 409 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 8 407 - -
Amo20g2529 409 SUPERFAMILY SET domain 287 397 IPR046341 -
Amo20g2529 409 SMART PHD_3 64 110 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2529 Amo-Chr20 118975939 118979968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2529 36 151 C2H2 Transcription Factor Family AT3G01460 33.051 7.75e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo20g2529 SET 2.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2529 K24406 - tcc:18611813 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2529 20 118975939 118979968 Amo20g2529 20 118975939 118979968 ECH