LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo20g2518	ATGGTGGGAACATCAAGCTCAGACGAAGGTGCAGGGCATCCAGAGCCTCTTGATCCCGATGTGCTTGAAATTGATCCTACCGGTCGCTACATTAAGTATAAAGAAATGATCGGCAAAGGAGCTTTCAAGACTGTTTACAGGGCATTTGATGAAGTCAATGGACTCGAAGTTGCTTGGAGCCAGGTTCGGATTGATGAAGTACTACAGTCACCAGATGACTTAGAGAGGCTGTACTCGGAGGTGCATCTCTTGAGGTCATTGAAACACAATAACATAGTAAGGTTCTACAATTCTTGGATTGACGACAAACACAGGACAGTTAACATGATTACAGAGCTTTTCACCTCGGGGAGCCTCAGACAGTATTGTAAGAGACACAAGAAGATCAACATTAAGGCTATTAAGGGATGGGCAAGACAAATTTTAATGGGTTTAAGCTACCTCCATAATCACAGCCCTCCAATTATACATAGGGACCTGAAATGTGATAATATATTTATAAACGGTCACCAAGGAGAAGTGAAAATTGGAGATCTGGGATTAGCAACTCTCTTGAAAGAGGGTAATGCTAAGAGCGTAATTGTAAGAAAAGTGCTCAGTAAGTTCTACCATCTCATAGCTTTAAAATTTATGGCACCTGAACTGTATGATGAAAGTTACAATGAGCTAGTTGACATATATTCTTTCGGGATGTGCATGCTTGAGTTGGTGACTTCTGAGTATCCCTACAGTGAATGTAGAAACTCAGCTCAGATATTCAAGAAAGTTTCAACTGGTGTAAAGCCCTTTGGTCTTTCTAAAGTCAAAGATCCAGATGTAAAATCATTTATTGAGAAATGTCTTGTCCCTGCATCTCAAAGATTGTCAGCTAAGGAGCTTCTCATGGATCCTTTTCTCCAAGCCAATGGTTCAGTAACAAATCGTCCTCTTCCATTACCAGATATTGTTCTTCCGAAATTTGGAGCCTTTGAAAATCGTTGCCTGATGTCAGAAGGTCCTGCTAGTGCACGCATAGGATCCATTCCCATGGATCCTGGTGGTACCAATGAGCTACCAGTGACTGCTGTATTTTATAATAATAATGGTGATGATGGAACACCTTCTCCATGTGTTGAGATACGAAGGCAGAAGGGAAGTGATATTTTCTTTCTGAGAGGCGAAGAAAATGATGAGAATTCAGTGTCTTTAGTTCTCCGAATAGCTGATCAGAGTGGGCGGGCAAGGAATATCCATTTCATATTTTACCTCAGCAGTGACACAGCCATCTCAGTTTCAACGGAAATGGTTGAGCAACTTGATCTTGCTCAGCAGAATGTTAAATTCATAGCTGAGATAATTGACTTGTTATTGATGACTTTGGTTCCTGATTGGAAACCTTGTGTACCGGTTGATCATCTGGCTTCTCCAAATGTTAGATGGCCACACTCGAGCCAACAGAACAGCTCTGGGTTTTCAATGTTCAAAAATAGTTCGGAAGGTGGTAGCCAAACTGCAAATAAAAATGCAGGTACAACATTGATTTCAAGGTCAGCACAAAGAGGAAACAATGAGAATACAACTTTTCACAAGGCATGGTCTCAAGCAAGCATTGGTCTTCAAGAAGGAACAATGGCAGATGATTTGCGTTCCGAGATGTCGTATACTTCTGCAACGTCTAACTTAGCCGGCAAGAATTTGTCCATGGTTTCATTGGCTTCATTGGTGTCTGCTAACTCAGAATTTGCAGACTTGGGTCTTACTAGGACAATCCGGAGAATAGAGTTAGCAAAGGTTGAACAGCAATACCAAGATGCAATTAAAGATTTATCAGAAAGGAGATACCTTGCCATAATGGAAACTAGGAGAGGCTGGCGCAAAAGATGCCATTATAGAAATCACTTCAGAGTTCACTAA	1893	0.412	MVGTSSSDEGAGHPEPLDPDVLEIDPTGRYIKYKEMIGKGAFKTVYRAFDEVNGLEVAWSQVRIDEVLQSPDDLERLYSEVHLLRSLKHNNIVRFYNSWIDDKHRTVNMITELFTSGSLRQYCKRHKKINIKAIKGWARQILMGLSYLHNHSPPIIHRDLKCDNIFINGHQGEVKIGDLGLATLLKEGNAKSVIVRKVLSKFYHLIALKFMAPELYDESYNELVDIYSFGMCMLELVTSEYPYSECRNSAQIFKKVSTGVKPFGLSKVKDPDVKSFIEKCLVPASQRLSAKELLMDPFLQANGSVTNRPLPLPDIVLPKFGAFENRCLMSEGPASARIGSIPMDPGGTNELPVTAVFYNNNGDDGTPSPCVEIRRQKGSDIFFLRGEENDENSVSLVLRIADQSGRARNIHFIFYLSSDTAISVSTEMVEQLDLAQQNVKFIAEIIDLLLMTLVPDWKPCVPVDHLASPNVRWPHSSQQNSSGFSMFKNSSEGGSQTANKNAGTTLISRSAQRGNNENTTFHKAWSQASIGLQEGTMADDLRSEMSYTSATSNLAGKNLSMVSLASLVSANSEFADLGLTRTIRRIELAKVEQQYQDAIKDLSERRYLAIMETRRGWRKRCHYRNHFRVH*	631

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Amo20g2518	630	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	1	581	-	-
Amo20g2518	630	Pfam	Protein kinase domain	33	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Amo20g2518	630	Gene3D	Transferase(Phosphotransferase) domain 1	114	307	-	-
Amo20g2518	630	SUPERFAMILY	Protein kinase-like (PK-like)	22	315	IPR011009	-
Amo20g2518	630	MobiDBLite	consensus disorder prediction	473	501	-	-
Amo20g2518	630	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	155	167	IPR008271	GO:0004672\|GO:0006468
Amo20g2518	630	Gene3D	-	392	457	-	-
Amo20g2518	630	ProSiteProfiles	Protein kinase domain profile.	31	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Amo20g2518	630	Gene3D	Phosphorylase Kinase; domain 1	17	112	-	-
Amo20g2518	630	MobiDBLite	consensus disorder prediction	1	21	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo20g2518	Amo-Chr20	118117221	118119970	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo20g2518	131	517	MAP Kinase Kinase Kinase	AT1G49160	58.915	1.83e-156	455

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Amo20g2518		Pkinase	8.4e-49	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo20g2518	K08867		-	gmx:121175054	787.719

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo20g2518	20	118117221	118119970	Amo20g2518	20	118117221	118119970	ECH
	Amo10g2024	10	73309084	73312454	Amo20g2518	20	118117221	118119970	hybridization

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