Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2518 ATGGTGGGAACATCAAGCTCAGACGAAGGTGCAGGGCATCCAGAGCCTCTTGATCCCGATGTGCTTGAAATTGATCCTACCGGTCGCTACATTAAGTATAAAGAAATGATCGGCAAAGGAGCTTTCAAGACTGTTTACAGGGCATTTGATGAAGTCAATGGACTCGAAGTTGCTTGGAGCCAGGTTCGGATTGATGAAGTACTACAGTCACCAGATGACTTAGAGAGGCTGTACTCGGAGGTGCATCTCTTGAGGTCATTGAAACACAATAACATAGTAAGGTTCTACAATTCTTGGATTGACGACAAACACAGGACAGTTAACATGATTACAGAGCTTTTCACCTCGGGGAGCCTCAGACAGTATTGTAAGAGACACAAGAAGATCAACATTAAGGCTATTAAGGGATGGGCAAGACAAATTTTAATGGGTTTAAGCTACCTCCATAATCACAGCCCTCCAATTATACATAGGGACCTGAAATGTGATAATATATTTATAAACGGTCACCAAGGAGAAGTGAAAATTGGAGATCTGGGATTAGCAACTCTCTTGAAAGAGGGTAATGCTAAGAGCGTAATTGTAAGAAAAGTGCTCAGTAAGTTCTACCATCTCATAGCTTTAAAATTTATGGCACCTGAACTGTATGATGAAAGTTACAATGAGCTAGTTGACATATATTCTTTCGGGATGTGCATGCTTGAGTTGGTGACTTCTGAGTATCCCTACAGTGAATGTAGAAACTCAGCTCAGATATTCAAGAAAGTTTCAACTGGTGTAAAGCCCTTTGGTCTTTCTAAAGTCAAAGATCCAGATGTAAAATCATTTATTGAGAAATGTCTTGTCCCTGCATCTCAAAGATTGTCAGCTAAGGAGCTTCTCATGGATCCTTTTCTCCAAGCCAATGGTTCAGTAACAAATCGTCCTCTTCCATTACCAGATATTGTTCTTCCGAAATTTGGAGCCTTTGAAAATCGTTGCCTGATGTCAGAAGGTCCTGCTAGTGCACGCATAGGATCCATTCCCATGGATCCTGGTGGTACCAATGAGCTACCAGTGACTGCTGTATTTTATAATAATAATGGTGATGATGGAACACCTTCTCCATGTGTTGAGATACGAAGGCAGAAGGGAAGTGATATTTTCTTTCTGAGAGGCGAAGAAAATGATGAGAATTCAGTGTCTTTAGTTCTCCGAATAGCTGATCAGAGTGGGCGGGCAAGGAATATCCATTTCATATTTTACCTCAGCAGTGACACAGCCATCTCAGTTTCAACGGAAATGGTTGAGCAACTTGATCTTGCTCAGCAGAATGTTAAATTCATAGCTGAGATAATTGACTTGTTATTGATGACTTTGGTTCCTGATTGGAAACCTTGTGTACCGGTTGATCATCTGGCTTCTCCAAATGTTAGATGGCCACACTCGAGCCAACAGAACAGCTCTGGGTTTTCAATGTTCAAAAATAGTTCGGAAGGTGGTAGCCAAACTGCAAATAAAAATGCAGGTACAACATTGATTTCAAGGTCAGCACAAAGAGGAAACAATGAGAATACAACTTTTCACAAGGCATGGTCTCAAGCAAGCATTGGTCTTCAAGAAGGAACAATGGCAGATGATTTGCGTTCCGAGATGTCGTATACTTCTGCAACGTCTAACTTAGCCGGCAAGAATTTGTCCATGGTTTCATTGGCTTCATTGGTGTCTGCTAACTCAGAATTTGCAGACTTGGGTCTTACTAGGACAATCCGGAGAATAGAGTTAGCAAAGGTTGAACAGCAATACCAAGATGCAATTAAAGATTTATCAGAAAGGAGATACCTTGCCATAATGGAAACTAGGAGAGGCTGGCGCAAAAGATGCCATTATAGAAATCACTTCAGAGTTCACTAA 1893 0.412 MVGTSSSDEGAGHPEPLDPDVLEIDPTGRYIKYKEMIGKGAFKTVYRAFDEVNGLEVAWSQVRIDEVLQSPDDLERLYSEVHLLRSLKHNNIVRFYNSWIDDKHRTVNMITELFTSGSLRQYCKRHKKINIKAIKGWARQILMGLSYLHNHSPPIIHRDLKCDNIFINGHQGEVKIGDLGLATLLKEGNAKSVIVRKVLSKFYHLIALKFMAPELYDESYNELVDIYSFGMCMLELVTSEYPYSECRNSAQIFKKVSTGVKPFGLSKVKDPDVKSFIEKCLVPASQRLSAKELLMDPFLQANGSVTNRPLPLPDIVLPKFGAFENRCLMSEGPASARIGSIPMDPGGTNELPVTAVFYNNNGDDGTPSPCVEIRRQKGSDIFFLRGEENDENSVSLVLRIADQSGRARNIHFIFYLSSDTAISVSTEMVEQLDLAQQNVKFIAEIIDLLLMTLVPDWKPCVPVDHLASPNVRWPHSSQQNSSGFSMFKNSSEGGSQTANKNAGTTLISRSAQRGNNENTTFHKAWSQASIGLQEGTMADDLRSEMSYTSATSNLAGKNLSMVSLASLVSANSEFADLGLTRTIRRIELAKVEQQYQDAIKDLSERRYLAIMETRRGWRKRCHYRNHFRVH* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2518 630 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 581 - -
Amo20g2518 630 Pfam Protein kinase domain 33 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2518 630 Gene3D Transferase(Phosphotransferase) domain 1 114 307 - -
Amo20g2518 630 SUPERFAMILY Protein kinase-like (PK-like) 22 315 IPR011009 -
Amo20g2518 630 MobiDBLite consensus disorder prediction 473 501 - -
Amo20g2518 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Amo20g2518 630 Gene3D - 392 457 - -
Amo20g2518 630 ProSiteProfiles Protein kinase domain profile. 31 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2518 630 Gene3D Phosphorylase Kinase; domain 1 17 112 - -
Amo20g2518 630 MobiDBLite consensus disorder prediction 1 21 - -
Amo20g2518 630 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 1 581 - -
Amo20g2518 630 SMART serkin_6 31 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2518 630 CDD STKc_WNK 29 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2518 Amo-Chr20 118117221 118119970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2518 131 517 MAP Kinase Kinase Kinase AT1G49160 58.915 1.83e-156 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Amo20g2518 Pkinase 8.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2518 K08867 - gmx:121175054 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2518 20 118117221 118119970 Amo20g2518 20 118117221 118119970 ECH
Amo10g2024 10 73309084 73312454 Amo20g2518 20 118117221 118119970 hybridization