Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2508 ATGGGAGAGTTCAACAACAAACTGCCAGAAGATTCATGCAGCAGCTTGTGTTTTGCAGGTTCTGGTATGAAAATATTACAAAGTCATGGTATCATTCATAGAGATTTGAAACCAGAGAACATTTTGCTATCAAAACCCGGAGATGATGCGATTCTAAAGATTGCAGACTTTGGTCTCTCAAGAACTGTACGTCCTGGCGAGTATGCGGAGACAGTCTGTGGTACGCCATTATACATGGCACCGGAAGTTCTTCAGTTCCAGAAATATGATAGCAAGGCAGATATGTGGAGTATTGGGGTTATTCTTTTCGAGCTTCTAAACGGCTACCCTCCTTTTAATGGCAGAAATAATGTTCAGCTGTTAAAGAATATCAGATCATCTACCGGCTTGCCATTTTCTCAGATCATTCCTTTGGGATTGGATCCTGATTGTCTTGATGTTTGTTCAAAACTACTATGCTCAAATCCAGGTTATTGGCATCTCCTGTATTACTTATATTTTCCTTCTGTTCAATCAATTAACTTAGAAGAATTTAATTACTTCTCACTCCATTGCAGTGGATCGCCTATCTTTCGATGA 579 0.3955 MGEFNNKLPEDSCSSLCFAGSGMKILQSHGIIHRDLKPENILLSKPGDDAILKIADFGLSRTVRPGEYAETVCGTPLYMAPEVLQFQKYDSKADMWSIGVILFELLNGYPPFNGRNNVQLLKNIRSSTGLPFSQIIPLGLDPDCLDVCSKLLCSNPGYWHLLYYLYFPSVQSINLEEFNYFSLHCSGSPIFR* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2508 192 Pfam Protein kinase domain 21 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2508 192 SUPERFAMILY Protein kinase-like (PK-like) 21 157 IPR011009 -
Amo20g2508 192 PANTHER SERINE/THREONINE-PROTEIN KINASE ATG1T 20 156 - -
Amo20g2508 192 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 20 156 IPR045269 GO:0004674|GO:0006914
Amo20g2508 192 SMART serkin_6 1 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2508 192 Gene3D Transferase(Phosphotransferase) domain 1 5 158 - -
Amo20g2508 192 ProSiteProfiles Protein kinase domain profile. 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2508 192 ProSitePatterns Serine/Threonine protein kinases active-site signature. 31 43 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2508 Amo-Chr20 117410135 117412177 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2508 2 124 EF-hand Containing Proteins AT4G09570 42.308 1.09e-24 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Amo20g2508 Pkinase 4.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2508 - - lja:Lj1g3v1289070.2 233.802