Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2504 ATGAAGATCCTCACCGAGAGAGGGTACATGTTCACCACCTCAGCTGAACGGGAAATTGTCCGAGACATAAAGGAGAAGCTTGCATATGTTGCCTTGGATTATGAGCAAGAACTTGAGACTGCAAAGAGCAGTTCTTCAGTGGAGAAAAACTATGAGCTTCCTGATGGACAAGTTATCACAATTGGAGCCGAGAGGTTCCGTTGTCCGGAAGTCCTTTTCCAGCCATCTATGATTGGAATGGAAGCTGCTGGTATTCATGAAACCACCTACAACTCTATCATGAAGTGTGATGTTGATATCAGGAAGGATCTGTATGGCAACATTGTTCTTAGTGGTGGGTCTACGATGTTCCCTGGTATTGCTGACCGTATGAGCAAAGAGATCACTGCGCTTGCTCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGGAAGTACAGTGTCTGGATCGGAGGATCCATCCTTGCATCACTCAGCACCTTCCAACAAATGTGGATATCAAAGGGTGAATATGATGAGTCTGGCCCATCCATTGTCCACAGGAAATGCTTCTAA 561 0.4599 MKILTERGYMFTTSAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2504 186 Gene3D - 115 186 - -
Amo20g2504 186 Pfam Actin 6 186 IPR004000 -
Amo20g2504 186 Gene3D Actin; Chain A, domain 4 1 85 - -
Amo20g2504 186 ProSitePatterns Actins signature 2. 167 175 IPR004001 -
Amo20g2504 186 PANTHER ACTIN 1 185 IPR004000 -
Amo20g2504 186 SMART actin_3 1 186 IPR004000 -
Amo20g2504 186 SUPERFAMILY Actin-like ATPase domain 1 186 IPR043129 -
Amo20g2504 186 PANTHER ACTIN-7 1 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2504 Amo-Chr20 117141435 117142102 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2504 1 186 Cytoskeleton Gene Families AT5G09810 97.849 5.37e-134 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2504 K10355 - gmx:100806695 370.163