Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2503 ATGGCAGATGGTGAGGATATTCAGCCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCAGGATTTGCCGGTGATGATGCACCCAGGGCTGTGTTTCCCAGTATAGTTGGCCGACCTCGCCACACTGGTGTTATGGTTGGAATGGGTCAAAAGGATGCCTATGTAGGTGATGAAGCCCAATCCAAAAGAGGTATTCTTACTCTCAAATATCCCATTGAGCATGGTATAGTCAGCAACTGGGATGACATGGAAAAGATCTGGCATCATACATTCTACAATGAATTGCGTGTTGCTCCTGAGGAGCACCCTGTGCTTCTAACGGAGGCTCCTCTCAACCCAAGGCCAACAGAGAAAAGATGA 363 0.4821 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPRPTEKR* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2503 120 Gene3D Actin; Chain A, domain 2 36 73 - -
Amo20g2503 120 PANTHER ACTIN 1 116 IPR004000 -
Amo20g2503 120 Pfam Actin 5 116 IPR004000 -
Amo20g2503 120 CDD NBD_sugar-kinase_HSP70_actin 10 115 - -
Amo20g2503 120 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Amo20g2503 120 SUPERFAMILY Actin-like ATPase domain 5 117 IPR043129 -
Amo20g2503 120 Gene3D - 4 120 - -
Amo20g2503 120 PANTHER - 1 116 - -
Amo20g2503 120 PRINTS Actin signature 51 62 IPR004000 -
Amo20g2503 120 PRINTS Actin signature 28 37 IPR004000 -
Amo20g2503 120 PRINTS Actin signature 63 85 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2503 Amo-Chr20 117140697 117141146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2503 1 120 Cytoskeleton Gene Families AT3G12110 95.000 1.60e-83 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2503 K10355 - atr:18448078 244.202