Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2491 ATGGAAAACTCAACCTTACCGGAAAATAGCATAGAGAACAGGAAGGTGGCGGTAGCYGCGGCGGAAGGCGACAGCGTATCGTCCGATGGTTTGAAAGGCGAAGATGGTGAGCGGAACTCAAGCGGCGCGAACCGGTGGCCGCGAGAAGAGACAATGGCTTTGATAAAAATTAGGTCTGAAATGGACGGCGCCTTCAGAGACATCAGCCCCAAAGCCCRTCTTTGGGAACAAGTCTCAAGGAAATTAGGTGAGCTGGGATATGAAAGGAGTGCGAAGAAGTGTAAAGAGAAGTTTGAGAATATTTACAAGTACCATAGGAGGACCAAGGAAGGCCGTTCCGGAAAGCGTAACGGAAAAACTTACCGTTTCTTTGATCAACTCGAAGCATTAGACCCGCACCCTAACAATAACGCCGTTATTCAAGATGCGGTTCCTTGTTCCGTTAGGTTTCCGGTTACTGCAATGGAGCATTCCAGTTCCGCCACTTCGTCTTACTCGAGCGGCGGGGGTGAAGACGAAGGTGAAGGGAGGAGGAGGAAGAAGAAGAGGAGGCTGAGGGTGTTCTTTGAGGGGCTTATGAGGGAGGTTTTGGAGAAGCAAGAGAGCCTGCAGAAGAAGTTCATGGAAGTTCTCGATAAGTGCGACCAGGATCGAATGGCGAGGGAGCAAGCATGGAAGACGGAGGAGCTTGCCAGGATCAAGAAGGAGCGCGAGCTTCTCGCTCAGGAACGGTCGATTGCCGCCGCCAAGGACGAAGCGGTTATGTCCTTCATAAGAAAGTTTGCAGAAAACAGCAACAACAATGGCGCGCTGCAATTTCCAGCTGATAATAATAACCACCTCCAGGAGCAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAAGACGAAGTTGGGAATGGCATCAATGTTGGGAATTTTGTGCACATGAGCTCTTCGCGGTGGCCTAAGGATGAAGTGGAGGCATTGATAAGGCTGAGGACACAAGTGGATGAGCAGTTACAGCAGCAGCAAGGGAACAAGGGACCGCTTTGGGAGGAGGTGTCTACGGCCATGAAGGGACTCGGATACGATCGGAGCGCAAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAGAATGAAGGAGAAGAACAAGAGGAAGCCCGAGGACTCTAAAACATGTCCCTATTATCACCATCTTGAGGCCATATACAGCAAGAAGCCCAAGAACAATAACAAGCTTGATGATAATGATAATGACAAGAAGAACGAGTTGAAGCCTGAAGAGCTTTTGATGCATATCATGAATGGTCAAGAAGAGAGGCAGCAGGATCCAGATCAAGATCAGTCTTCATCTGAAGATGCAGACAGAGACAACCATAATGGATATCAGATGCTTGATAATAGTCCTTCTTCCATACCAATCATGAGTTAA 1443 0.4872 MENSTLPENSIENRKVAVAAAEGDSVSSDGLKGEDGERNSSGANRWPREETMALIKIRSEMDGAFRDISPKAXLWEQVSRKLGELGYERSAKKCKEKFENIYKYHRRTKEGRSGKRNGKTYRFFDQLEALDPHPNNNAVIQDAVPCSVRFPVTAMEHSSSATSSYSSGGGEDEGEGRRRKKKRRLRVFFEGLMREVLEKQESLQKKFMEVLDKCDQDRMAREQAWKTEELARIKKERELLAQERSIAAAKDEAVMSFIRKFAENSNNNGALQFPADNNNHLQEQEKEKEKEKEKEKEKEKDEVGNGINVGNFVHMSSSRWPKDEVEALIRLRTQVDEQLQQQQGNKGPLWEEVSTAMKGLGYDRSAKRCKEKWENINKYFKRMKEKNKRKPEDSKTCPYYHHLEAIYSKKPKNNNKLDDNDNDKKNELKPEELLMHIMNGQEERQQDPDQDQSSSEDADRDNHNGYQMLDNSPSSIPIMS* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2491 480 MobiDBLite consensus disorder prediction 159 179 - -
Amo20g2491 480 MobiDBLite consensus disorder prediction 28 44 - -
Amo20g2491 480 CDD GT1 44 109 - -
Amo20g2491 480 Gene3D - 320 382 - -
Amo20g2491 480 Gene3D - 46 107 - -
Amo20g2491 480 MobiDBLite consensus disorder prediction 267 314 - -
Amo20g2491 480 MobiDBLite consensus disorder prediction 407 480 - -
Amo20g2491 480 CDD GT1 318 384 - -
Amo20g2491 480 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 1 479 - -
Amo20g2491 480 ProSiteProfiles Myb-like domain profile. 38 102 IPR001005 -
Amo20g2491 480 Coils Coil 232 252 - -
Amo20g2491 480 MobiDBLite consensus disorder prediction 280 304 - -
Amo20g2491 480 MobiDBLite consensus disorder prediction 407 464 - -
Amo20g2491 480 SMART sant 42 104 IPR001005 -
Amo20g2491 480 SMART sant 316 379 IPR001005 -
Amo20g2491 480 Coils Coil 277 302 - -
Amo20g2491 480 MobiDBLite consensus disorder prediction 1 49 - -
Amo20g2491 480 Pfam Myb/SANT-like DNA-binding domain 318 406 IPR044822 -
Amo20g2491 480 Pfam Myb/SANT-like DNA-binding domain 44 130 IPR044822 -
Amo20g2491 480 ProSiteProfiles Myb-like domain profile. 318 377 IPR001005 -
Amo20g2491 480 MobiDBLite consensus disorder prediction 465 480 - -
Amo20g2491 480 PANTHER - 1 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2491 Amo-Chr20 116360831 116364089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2491 179 413 Trihelix Transcription Factor Family AT1G76890 46.502 5.33e-66 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo20g2491 Myb_DNA-bind_4 2.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2491 - - aip:107623117 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2491 20 116360831 116364089 Amo20g2491 20 116360831 116364089 ECH
Amo10g1976 10 71580540 71582793 Amo20g2491 20 116360831 116364089 hybridization