Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2489 ATGGATTTGGATGATTTCCGATCCATATTGGATACTGCCGGCGTTGACGTTTGGCTCTTCATCGACACCGCCATCACCGTCGCCTCCTTGGATTGCGGTGACGAGCTGAGGCGACGGAGGGATGGAATCATAGAACGAATCTTCGCTGCCACAACACCTCCTCTGCCGTGCCGGAACTGCGACGGCGATCGTAACCTGAGGTCCAATGGCTACCAAATCAAGAAACGCCTCAGCCCTAGCCCTAGCCCTCAGCGACAACACAGCCACCACCAGCAACGTCGTGGTGGCCGTGGTGCCGCCGCTGCAGTTTCTCCCTCAACGCCGCAGTCTCTCGGAGATGATGATGACAACGGCCACGCCGACGCCGCCGAAGACGACCGTGAAGATTTGGATCCTTACGGCGGCTTGTTCGATGATGAGCAGAAGAAGATTCTAGAGATTAAAGAGCAGCTCGAAGAACCCGACCAGTCTGAAGAATCGTTGGTGGAGCTGCTGCAAAATCTCGCAGACATGGATATTACATTCCAAGCGTTAAAGGAGACTGACATTGGGAGGCACGTGAATCGGTTGCGGAAGCATTCCTCCAATGACGTTCGCAGATTGGTGAAGCTACTTGTGAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAGGTTGAATCAACCGGGTGGAGCAGCTTCTCTCATGGCTGATGGGGACTCTCCACCGCTGAAAACCACCCAAAACGGGCATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAGTGAGTACTTGGGCATCTTATTCAAATCTTCTTTTTGTGTGTCTCTGTTGTTTTGGATTTTGGCGAACAATAATGCTTTTCTGCTTCTGTATGCTGACACAGATGGAAGTTCTGGGTCTGACCGTAACACCTCAGAGGCAGAACCAAAACCAAAAGTGATTCCCCGCAAAGAAGCTCCGCCAAAACCAACGCCGCCACCTTCAGTCCCTACTCCTTCCATCGCCTTCCAAAATAGACAGAGAGAACAAAGAGATAGAGATTTTGACGCGGAGAGGCTTGCTTCGGCAAGGAAGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCGAAAAAGCAAAGAACGATTCAGGTGATGGACATCCACGAGTTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGAAAGAACAAAGGCAGTGGCGGTTCTCAGGGAAGGCACTGGTGA 1218 0.5115 MDLDDFRSILDTAGVDVWLFIDTAITVASLDCGDELRRRRDGIIERIFAATTPPLPCRNCDGDRNLRSNGYQIKKRLSPSPSPQRQHSHHQQRRGGRGAAAAVSPSTPQSLGDDDDNGHADAAEDDREDLDPYGGLFDDEQKKILEIKEQLEEPDQSEESLVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKLLVRKWKEIVDEWVRLNQPGGAASLMADGDSPPLKTTQNGHHQIPDFAYSPNPHSEYLGILFKSSFCVSLLFWILANNNAFLLLYADTDGSSGSDRNTSEAEPKPKVIPRKEAPPKPTPPPSVPTPSIAFQNRQREQRDRDFDAERLASARKRLQENYKEAENAKKQRTIQVMDIHELPKSKPKNAFFGKNKGSGGSQGRHW* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2489 405 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 138 223 IPR035441 -
Amo20g2489 405 SMART TFS2_5 144 215 IPR003617 GO:0005634
Amo20g2489 405 MobiDBLite consensus disorder prediction 336 386 - -
Amo20g2489 405 MobiDBLite consensus disorder prediction 315 329 - -
Amo20g2489 405 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 142 222 IPR035441 -
Amo20g2489 405 ProSiteProfiles TFIIS N-terminal domain profile. 139 216 IPR017923 -
Amo20g2489 405 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 291 405 - -
Amo20g2489 405 CDD TFIIS_I 141 214 - -
Amo20g2489 405 MobiDBLite consensus disorder prediction 73 135 - -
Amo20g2489 405 Pfam TFIIS helical bundle-like domain 164 213 IPR017923 -
Amo20g2489 405 Coils Coil 347 374 - -
Amo20g2489 405 MobiDBLite consensus disorder prediction 294 405 - -
Amo20g2489 405 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 261 - -
Amo20g2489 405 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 261 IPR044790 -
Amo20g2489 405 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 291 405 IPR044790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2489 Amo-Chr20 116102330 116106234 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Amo20g2489 Med26 4.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2489 - - aip:107622503 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2489 20 116102330 116106234 Amo20g2489 20 116102330 116106234 ECH
Amo13g3971 13 132144779 132147323 Amo20g2489 20 116102330 116106234 PCT
Amo20g2489 20 116102330 116106234 Amo13g3971 13 132144779 132147323 PCT