Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2482 ATGCGTATGACTAGTAGTGTCACACTTCTCTTCTTGATTCTTTGCTTCTCTAACTTCTTGTATAATGCTTCTGCTCTTGTCTCTGATGATGTCACTCTCTGTTCACTCTTGACTCATTGGACCTTTGTTCCACTCATCATAAACTCCACTTGGAATGGCTCTGATTCGGTTCTGTGCTCGTGGATTGGAGTCCAATGTAACCATGCCTATGATGTGATCTCCCTTAACCTCAGTGATCTTGGGATTCAAGGTCAACTTGGACCAGAAATAGGACAATTACATCGCTTGCAGACCCTTGTGTTGTCGAATAATGGTTTCTTAGGAAAGGTACCTTCAGAGCTAAGTAACTGTACTTTGCTTCAGGTCTTAGACTTTTCTAATAACAGCTTTTGCGGACTGATATCAAATAGCTTCAAGAAGTTGCAAAGCTTACGCAGCATGAATTTGTCGTCTAATCTAGTGAATGGTGCGATTCAAGATTCCTTGTTTCAAATTCGTCAGCCTGAAGAAATGAACCTTCACAATAACCATCTCAGTGGTCCTATACCAACCGGTATTGGGAACTTAACTGAGCTGTTAAGGTTACACTTACATGGTAATCGGTTGTCAGGTACGATTTCTTCATCCATTGGTAATTGCAGTAAACTAGAGGAATTGTTTCTGAATGAGAATAGATTGAGTGGGGAACTATCTTTGGAGATGGCAAAGCTCAAGAATCTAAAGACTATGTCTTTGTTTGACAACCAGTTCTCAGGAGTCATTCCTCAAGACTTGGGAATCAATAGCAGCATAGTGAAACTGGACTTTACAAATCTTCTACCAAATCTTTGCTTTCGAAAGAAGTTAAAAGTGCTGAACATGGGATCTAATCGACTTCAAAGTAACATACCTTCTGATGTAGGAAGGTGTACAAGTATAAGTGGTATCCCGAGCTTTTTCTCAGAACGTAGCAAGCTTCGTGAACTACAACTTAGTGGAAATTTAATTGGAGGAACAATTCCTCCATCATTGGAAAAACTACAGAAGCTGTTATATGGGTTGAATTTGAGTAGCAATGGATTGACAGGAAACATAGATGTTCTTGCTCAACTAGCATTGATTGAGATCAATATTTCATATAATTTCTTGTATGGTCTTGTTCCAACATCCCTCTGCAAGTTTTTGGATTCCTCATCATCTTCTTTCTTGGGCAATCCCTATTTAAATGTCAGTTGTTCTCCTTCTAGTGGCCTGGATCAGACCAACACTTCTATGCTGGTAGCTCTACTTTTGATTTATCTTCGCAAGAAAGAAATGAAGAATTATGTCTATGGTGAAAGAGGAGCAGGAAGAATCAGTTTTCTGTACAAGGAAGAAATGAAGTTAGGAGCTCATGGGATTGTTTATAGAGCTCAACTGGGTTATACAACTTTTGCTGTAAAGAAGTTTGCATTCGAAAGGAATAAGAGAAAGCTATTGGATAGGAGAGAACTATGGAACCTTGCTGAGCATTCTTATTGTCAATCTCATTCTTGGAAAAAGCTTTTAACATATGTTGTAGGTACTGCTGGTTATATCGCACCAGTGCAGAGCAAAAAGTCTGATGTATACAGCTATGGGGAGGTTGTTGATCTAGACATTGCAAATGCATTTCCCAATTCAAGAGTATTGGCAAGGCAAGTCACTGAGGTGCTTTTGTTGGCATTAAGATGTACTAAGAGGAAGCCTCGTGAGAGACCAACCATGAAAGACATTACTAGCTTCTATCAGAAAAACATATTCAAGTTGAGTTGCGATGATGTGGATATGGTTAATGAAAATATTGTTAATGTGGTACCACAACCATACAATATTTCATTTCTCAGTACTAATCCAGTTTCTGACACTCAGAGTGACTCCTATATGCATGATCTTAGTCAATCTGAAGATTCTTTGGTTGATTGGAATGTGATGGCTACAACTAAAACTGTTGTTGATGGATTCATAGTTAAATTAATAGGCAATGGTAAGATATATACTGAACAGCACAATGTGCTGTCTCTTAACCTCACTAACCATGGTATTCCCGGTCAACTTGGATCCGAGATAAGGCAATTGCATTACTTGAAGACTCTTGTGTTGGCTAATAATGGTTTCTCAGAAAAGGTAACTTCAGAGTTAAGTAACTATAGTTTGCTTCAGCTCTTAGACCTTTCTAATAACAGCTTTAGTGGACAGATACCATATAGCTTCAAGAAGTTGCAAAATCTGCAGTATATGAGCTTGTCATTCAATCTGTTGAGTGGTGAGATTCCAGATTTCTTGTTTCAAATTCCTCAACTACAAGAAGTGAACCTTCACTCTAACCATCTCAGTGGTCCTATCCCGACCCGCATAGGCAACTTGACTGAGCTGTTGAGGTTTGATCTACATGGTAATAGGTTGACATGTACTATTCCTTCATCCATTGGTAATTGCATCAAATTAGAGGATTTGTTTTTGAATGAGAACAAACTCGAAGGCGTTCTACCATTGGTGAAGCTGGACCTTACAATGAATGATTTCATTGGTAATATCCCACCCAATCTCTGCCTTGAAAAACAATTACGTGTTTTGAACATGGGATTCAATAAAATTCAAGGTAGCTTACCTTCTGAGGTAGGAAGATGTGAAACTCTAAACATGTTAATTCTTAGTGAGAATCATTTAACCGGCTCTCTTCCGGAGTTCGCAAGTAACCTGAACCTCAAGATTATGGACATGAGCAGGAACAGAATTGGTGGAACTATACCATCAAGTTTGGAGAAGTGCACTAATCTTATCGAAATAAATTTGTTAATGAACAAATTTACTGGCATCATACCATCACAGCTTGGAATGCTTCTAAATCTTGAGGTTTTAAATCTTGCACATAACAGCTTGGAAGGTACTCTGCCAAATCAGCTGTCAAATTGTGCTAAAATGGATAGTTTTGATGTTGGATTCAATTCCCTCAATGGATCATTCCCATCAAGTTTACAGAGTTGGACGGATTTAACAACATTGATTTTAAGAGAGAATCGTTTTACAGGGAGTATCCTAACTGTTCTTTCAGAATTTAACAAGCTCCATGATTTACAGCTTGGCGGAAATTTGTTTGGAGGAAAAATTCCTCCATCGTTAGGAAAGTTGAAGAATCTGATCTATGGATTAAATCTAAGTGCTAATGGATTGACAGGTGAAATTCCATTTGAAATTGGGAAGCTAAAAGTACTGTCTAGTCTGGATTTATCCTCAAACAATTTGACAAGAAGCATGGATGTTCTTGGTGAACTTTCGTTGGACAACTTGAATATTTCATACAATTTCTTGCATGGTCCAGTATCAAAAACTCTGATGAATTTCTTAAATTCCTCACCATCTTCATTCTTGGAAAATCCATATCTCTGTGTCAGTTTTTCAGCTTCTCATAGGTCAAATCGCACCAAAGCTTGTTACTTGAAGCCATCTGTCTACAAATCAACTTATCATTTAGGTATCAGTATAAGTGCAATGGTGATGATAGAACTTGGTTCCACAATATTGGTTTCTGGCATGCTAATAGCACTAGTTTTTTGCCGGTTAAATGCCTATGATTCAATGCTTTCACATGGTGAAAATAAAAAAGAAGATATTAACTTGGGTTTACCTTGGAATTGTGGCATGCTCAAGGATGCTATGATCAAAGTAGATGATGGGTGTATTGTTGGCAGAGGAGCCTATGCAATAGTTTATAAAGTCCACAATCAAGGTCTAGTTCTTACTGTACAGAAGAGTGTATTTAGAGGAAAGGACAACAAGCGCTTAGGAATTATGAAAAGAGAAATCAAAACCCTCTATATGATTAAGCACAGAAATTTGGTAAGAATCTTGGGATACAGTGTGGCTAAGGACTATGGTGTAATGTTCACTCACTACATGGAAAATGGAAGCCTTCATGATATTTTGCATAGGAACATTCTATCACCACCCTTAATCTGGAATGTTCGGCTTAAGATAGCTGATGGAATTGCACAGGGACTAAAATACCTGCATTATGACTGCGATCTACCAATAGTGCACCGAGACATCAAAGCACAGAATATACTCCTTGATGTTGAGATGGAGCCTCATATTTCAAATTTTGGTACTGCCAACATCAGGAACCTAACTGAGGATTCTTATACTCATTCTAATCTCCCTTGGCAAAAGCTTTCAGCACGTATAGCTGGTACTGCTGGCTATATGGCACCAGGTGTAGCACCACAATTACCATTCAATAATGAACCAGATATCAGTACTAGTCCAGTTTACAACACTCAGGATCAGGGAGACTCCTATGTGCATGAAGAAAGTAATGAACCACAAGATGTCTATACTTTAAATGATTTGAGGCTTGTGTCTACACCTAAAATTGGTGTTGATGGACTCATAATTAAAGTAATAGGCAATGGTAAGTTACATGTTGAACAATTTACAGTGAAAACTACACTGGTTGTTCCTAAAGTGACCTACACTTGGCCTTATTTGAAGTTCCTTCCCACTGTGACTGGACCAGTAGTTACAATACCTTTCAACTGGTTTTTCCTCTCTTCTTGGGCTCAATATATGTACCAGAAGAGTTCTTTAAAATTATACCTCAATTTCTTCTTTATAGGCACCTATCAAGGACACTTCTACATGTTGTGTAAACTCTGA 4653 0.3815 MRMTSSVTLLFLILCFSNFLYNASALVSDDVTLCSLLTHWTFVPLIINSTWNGSDSVLCSWIGVQCNHAYDVISLNLSDLGIQGQLGPEIGQLHRLQTLVLSNNGFLGKVPSELSNCTLLQVLDFSNNSFCGLISNSFKKLQSLRSMNLSSNLVNGAIQDSLFQIRQPEEMNLHNNHLSGPIPTGIGNLTELLRLHLHGNRLSGTISSSIGNCSKLEELFLNENRLSGELSLEMAKLKNLKTMSLFDNQFSGVIPQDLGINSSIVKLDFTNLLPNLCFRKKLKVLNMGSNRLQSNIPSDVGRCTSISGIPSFFSERSKLRELQLSGNLIGGTIPPSLEKLQKLLYGLNLSSNGLTGNIDVLAQLALIEINISYNFLYGLVPTSLCKFLDSSSSSFLGNPYLNVSCSPSSGLDQTNTSMLVALLLIYLRKKEMKNYVYGERGAGRISFLYKEEMKLGAHGIVYRAQLGYTTFAVKKFAFERNKRKLLDRRELWNLAEHSYCQSHSWKKLLTYVVGTAGYIAPVQSKKSDVYSYGEVVDLDIANAFPNSRVLARQVTEVLLLALRCTKRKPRERPTMKDITSFYQKNIFKLSCDDVDMVNENIVNVVPQPYNISFLSTNPVSDTQSDSYMHDLSQSEDSLVDWNVMATTKTVVDGFIVKLIGNGKIYTEQHNVLSLNLTNHGIPGQLGSEIRQLHYLKTLVLANNGFSEKVTSELSNYSLLQLLDLSNNSFSGQIPYSFKKLQNLQYMSLSFNLLSGEIPDFLFQIPQLQEVNLHSNHLSGPIPTRIGNLTELLRFDLHGNRLTCTIPSSIGNCIKLEDLFLNENKLEGVLPLVKLDLTMNDFIGNIPPNLCLEKQLRVLNMGFNKIQGSLPSEVGRCETLNMLILSENHLTGSLPEFASNLNLKIMDMSRNRIGGTIPSSLEKCTNLIEINLLMNKFTGIIPSQLGMLLNLEVLNLAHNSLEGTLPNQLSNCAKMDSFDVGFNSLNGSFPSSLQSWTDLTTLILRENRFTGSILTVLSEFNKLHDLQLGGNLFGGKIPPSLGKLKNLIYGLNLSANGLTGEIPFEIGKLKVLSSLDLSSNNLTRSMDVLGELSLDNLNISYNFLHGPVSKTLMNFLNSSPSSFLENPYLCVSFSASHRSNRTKACYLKPSVYKSTYHLGISISAMVMIELGSTILVSGMLIALVFCRLNAYDSMLSHGENKKEDINLGLPWNCGMLKDAMIKVDDGCIVGRGAYAIVYKVHNQGLVLTVQKSVFRGKDNKRLGIMKREIKTLYMIKHRNLVRILGYSVAKDYGVMFTHYMENGSLHDILHRNILSPPLIWNVRLKIADGIAQGLKYLHYDCDLPIVHRDIKAQNILLDVEMEPHISNFGTANIRNLTEDSYTHSNLPWQKLSARIAGTAGYMAPGVAPQLPFNNEPDISTSPVYNTQDQGDSYVHEESNEPQDVYTLNDLRLVSTPKIGVDGLIIKVIGNGKLHVEQFTVKTTLVVPKVTYTWPYLKFLPTVTGPVVTIPFNWFFLSSWAQYMYQKSSLKLYLNFFFIGTYQGHFYMLCKL* 1551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2482 1550 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 308 406 - -
Amo20g2482 1550 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 666 830 - -
Amo20g2482 1550 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 9 214 - -
Amo20g2482 1550 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 830 1409 - -
Amo20g2482 1550 Pfam Leucine rich repeat 719 777 IPR001611 GO:0005515
Amo20g2482 1550 PANTHER OS08G0446200 PROTEIN 534 592 - -
Amo20g2482 1550 SUPERFAMILY RNI-like 831 1118 - -
Amo20g2482 1550 Pfam Leucine Rich Repeat 120 141 IPR001611 GO:0005515
Amo20g2482 1550 Pfam Leucine Rich Repeat 949 971 IPR001611 GO:0005515
Amo20g2482 1550 PANTHER OS08G0446200 PROTEIN 666 830 - -
Amo20g2482 1550 PANTHER OS08G0446200 PROTEIN 830 1409 - -
Amo20g2482 1550 PANTHER OS08G0446200 PROTEIN 215 358 - -
Amo20g2482 1550 Gene3D Ribonuclease Inhibitor 833 1139 IPR032675 -
Amo20g2482 1550 SUPERFAMILY RNI-like 72 397 - -
Amo20g2482 1550 SMART LRR_typ_2 189 213 IPR003591 -
Amo20g2482 1550 SMART LRR_typ_2 853 876 IPR003591 -
Amo20g2482 1550 SMART LRR_typ_2 141 165 IPR003591 -
Amo20g2482 1550 SMART LRR_typ_2 93 117 IPR003591 -
Amo20g2482 1550 SMART LRR_typ_2 280 303 IPR003591 -
Amo20g2482 1550 SMART LRR_typ_2 788 812 IPR003591 -
Amo20g2482 1550 SMART LRR_typ_2 1068 1091 IPR003591 -
Amo20g2482 1550 SMART LRR_typ_2 317 340 IPR003591 -
Amo20g2482 1550 SMART LRR_typ_2 740 764 IPR003591 -
Amo20g2482 1550 SMART LRR_typ_2 947 971 IPR003591 -
Amo20g2482 1550 Pfam Protein kinase domain 1227 1408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2482 1550 SUPERFAMILY Protein kinase-like (PK-like) 505 589 IPR011009 -
Amo20g2482 1550 SMART serkin_6 1222 1478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2482 1550 Gene3D Ribonuclease Inhibitor 266 408 IPR032675 -
Amo20g2482 1550 Gene3D Ribonuclease Inhibitor 622 781 IPR032675 -
Amo20g2482 1550 Gene3D Ribonuclease Inhibitor 38 186 IPR032675 -
Amo20g2482 1550 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 534 592 - -
Amo20g2482 1550 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 215 358 - -
Amo20g2482 1550 Gene3D Transferase(Phosphotransferase) domain 1 1216 1417 - -
Amo20g2482 1550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1344 1356 IPR008271 GO:0004672|GO:0006468
Amo20g2482 1550 SUPERFAMILY Protein kinase-like (PK-like) 1224 1415 IPR011009 -
Amo20g2482 1550 SUPERFAMILY L domain-like 665 896 - -
Amo20g2482 1550 Gene3D Ribonuclease Inhibitor 190 265 IPR032675 -
Amo20g2482 1550 PANTHER OS08G0446200 PROTEIN 9 214 - -
Amo20g2482 1550 PANTHER OS08G0446200 PROTEIN 308 406 - -
Amo20g2482 1550 ProSiteProfiles Protein kinase domain profile. 1222 1550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2482 1550 Gene3D Transferase(Phosphotransferase) domain 1 492 609 - -
Amo20g2482 1550 Gene3D Ribonuclease Inhibitor 782 832 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2482 Amo-Chr20 116029902 116038524 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2482 82 483 Receptor kinase-like Gene Family AT1G73080 29.167 8.66e-34 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo20g2482 Pkinase 3.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2482 - - adu:107496784 1196.8