Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2456 ATGCAGAAGCTGGATCGCTCTGGCATTGCTGCTAGCATTGGCGTTCCACCAGTTGTGAATGGGTCGGCCCCTGCACATCAAGCTGTTAGCTTGCCTATTGGTAATCCAGGCATAATACCAGCACCAACTCTCCCAACACAACTTATGACTAACCCAGTTGCCGAGCCTGTTGGAACCCCCAGCGAGTGTTTACTGTTGAAGAATATGTTTGATCCGGCCACTGAGACAGAACCAGATTTTGATTTAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCTAAGTATGGGCGGGTGAAGCATATCTCTGTTGACAAAAACAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTGGAAGCAGCAAGTGCCGCTCAACGTGCATTGCACCTGAGGTGGTTTGCACGTAGATTGATTTCAGCTTTGTTCATGCAACCTCAGATGTATGAAGAGAAGTTTAAAGGGGAGGTTTGA 471 0.4628 MQKLDRSGIAASIGVPPVVNGSAPAHQAVSLPIGNPGIIPAPTLPTQLMTNPVAEPVGTPSECLLLKNMFDPATETEPDFDLDIKEDVEEECSKYGRVKHISVDKNSAGFVYLQFETVEAASAAQRALHLRWFARRLISALFMQPQMYEEKFKGEV* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2456 156 PANTHER CC1-LIKE SPLICING FACTOR 1 156 - -
Amo20g2456 156 SMART rrm1_1 63 140 IPR000504 GO:0003723
Amo20g2456 156 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 1 80 IPR029123 -
Amo20g2456 156 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 156 - -
Amo20g2456 156 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 138 IPR000504 GO:0003723
Amo20g2456 156 Gene3D - 57 155 IPR012677 -
Amo20g2456 156 SUPERFAMILY RNA-binding domain, RBD 57 144 IPR035979 GO:0003676
Amo20g2456 156 CDD RRM3_RBM39_like 61 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2456 Amo-Chr20 114854959 114855903 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2456 K13091 - lja:Lj1g3v1233760.3 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1935 10 69950405 69956227 Amo20g2456 20 114854959 114855903 hybridization
Amo13g3980 13 132324652 132330598 Amo20g2456 20 114854959 114855903 PCT
Amo20g2456 20 114854959 114855903 Amo13g3980 13 132324652 132330598 PCT