Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2455 ATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTCCTTGGACAGCCTGTGATGGTTAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATACTACTAGTGGAGCTGCTGGTGTAGCAGGACCATATGGAGCTGTAGACAGGAAACTGTATGTAGGGAACCTTCACTTCAACATGACCGAGAGTCAACTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTACAATTGCCACTTGATCTGGAAACTGGACATTGCAAGGGTTTTGGTTTGCTCATCTTGAGCATTCCAAGGCAGCTCTGA 318 0.4623 MSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGLLILSIPRQL* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2455 105 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 105 IPR000504 GO:0003723
Amo20g2455 105 PANTHER CC1-LIKE SPLICING FACTOR 1 97 - -
Amo20g2455 105 Gene3D - 17 100 IPR012677 -
Amo20g2455 105 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 96 IPR000504 GO:0003723
Amo20g2455 105 SUPERFAMILY RNA-binding domain, RBD 9 96 IPR035979 GO:0003676
Amo20g2455 105 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2455 Amo-Chr20 114853731 114854397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2455 23 103 Eukaryotic Initiation Factors Gene Family AT4G34110 34.568 2.25e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2455 K13091 - gmx:100818613 182.185