Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2443 ATGTGTATTGAAAAGGTGGCGAATCCTCAAGAGAAAGGAAACAAGGTTGTTGAGAAGAGGGAATTGGAACTTGATGAGAGGATAAACAACAACAATTCTACATTGTCATCATCAATGCATATGATATTCCCGGGTTTGAATAGGGAGGAGGAGATGTCTGCCATGGTTTCGGCTTTGACCCATGTTGTCTCTGGTGAAGTTCCAACCGGTGCAGATGACGATTATTCACTTCCAACAAGTAACATGGCTTATGGTTCTTCAACATTTTCTAATTATGTTGTTGGAAGTGGCTCTTCTTCTATCAAGAGAACTAGGCAGCAAGATGATATATCCTTTGTTGACCACTTCTCTTCATCACATGGTGTAACTTCTTCATCCCCTACTACTATTCATACAACAATGAATAGAGAATGTTCAAGAGAAAGTGGAAGTGGGAGTGGAGAGGTGGAAGGAGAAAACAGGGGAAGGACAGTCTATGAATACAGAGCAAGAGAAGAGAATGTGAGAGAGGAAGAGCCAAGAAGGAAATACAGAGGCGTGAGGCAGAGGCCATGGGGCAAGTGGGCAGCCGAGATCAGAGACCCATTCAAAGCCGCCAGAGTCTGGTTAGGCACCTTTGACACTGCCGAGGCCGCGGCCAGAGCCTACGACCAAGCCGCCCTCCGTTTCCGGGGCAACAAGGCCAAACTCAACTTCCCCGAAAATGTCACGCTCCTCCGCCACGCGCCACCGCAAATCACTGCTTCTTCGCTCGTGGCCATTCCAACTTCCACCGAAGCCATTGTTCACAGTGAGCCTCTTATTAGCACTACTTTGCATGGTTCTTCTTCTTCCGCGGGTTTGTATGGGAATTTCCCCACCATGGATTCCACTATGACGGTTATGGCGTCAAGTGTGGCTTCTCATCTTCGACATTCTTCTCCGTCGTCAACGCAAGCTTCGCCGCCGTTCTTGTCTTCGTCTTCTGCGTTCGGTTCCACTACGCAGTTGCCGGCGGCGTGGTCATCAGCTTCCGGTAACAGCTCTTCTTCGTCGGGATAG 1041 0.488 MCIEKVANPQEKGNKVVEKRELELDERINNNNSTLSSSMHMIFPGLNREEEMSAMVSALTHVVSGEVPTGADDDYSLPTSNMAYGSSTFSNYVVGSGSSSIKRTRQQDDISFVDHFSSSHGVTSSSPTTIHTTMNRECSRESGSGSGEVEGENRGRTVYEYRAREENVREEEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDQAALRFRGNKAKLNFPENVTLLRHAPPQITASSLVAIPTSTEAIVHSEPLISTTLHGSSSSAGLYGNFPTMDSTMTVMASSVASHLRHSSPSSTQASPPFLSSSSAFGSTTQLPAAWSSASGNSSSSSG* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2443 346 CDD AP2 176 235 IPR001471 GO:0003700|GO:0006355
Amo20g2443 346 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 47 342 - -
Amo20g2443 346 PRINTS Ethylene responsive element binding protein signature 199 215 IPR001471 GO:0003700|GO:0006355
Amo20g2443 346 PRINTS Ethylene responsive element binding protein signature 177 188 IPR001471 GO:0003700|GO:0006355
Amo20g2443 346 PANTHER DNA-BINDING DOMAIN 47 342 IPR044808 GO:0003700|GO:0009873
Amo20g2443 346 SMART rav1_2 176 239 IPR001471 GO:0003700|GO:0006355
Amo20g2443 346 SUPERFAMILY DNA-binding domain 176 234 IPR016177 GO:0003677
Amo20g2443 346 ProSiteProfiles AP2/ERF domain profile. 176 233 IPR001471 GO:0003700|GO:0006355
Amo20g2443 346 MobiDBLite consensus disorder prediction 305 325 - -
Amo20g2443 346 Pfam AP2 domain 176 225 IPR001471 GO:0003700|GO:0006355
Amo20g2443 346 MobiDBLite consensus disorder prediction 121 154 - -
Amo20g2443 346 MobiDBLite consensus disorder prediction 121 142 - -
Amo20g2443 346 Gene3D AP2/ERF domain 175 235 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2443 Amo-Chr20 114360002 114362075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2443 170 243 AP2-EREBP Transcription Factor Family AT5G13330 71.605 1.12e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo20g2443 AP2 3.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2443 - - aip:107621817 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1924 10 69656201 69658708 Amo20g2443 20 114360002 114362075 hybridization