LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo20g2428	ATGGGATGTGTCTTCGGCCGGTTAATGGTCGATTCTCCACCTCGCAAACAGGTCAAGTCTAAGCGGCGTCACGGTCACCATGGCAACAAAGCTATGACCAAGAAAGGTTCAAGGAAACATCATCCTTCTAAGTATGCGGATATGAAAAGGGAGAGTAGGAGACAGAGTGTGAAGGAGAATAATAATAATAATAATATTAAGAATAATTTATCCGGAGCAGTTGAACAGCAGGTTTTGCGAGGTGGAAAAGAAAGTTTGGCTGCTCCCAAAGAAGAGAAGAAGATTGAGAGAGAAGACGATGATGAAGAGAAGAATATTGCAGGATATGAATTTGTTGATGGATGGCCAAAGTGGCTGGTTGATAATATCCCAAGATATGTTCTTGATACTCTTGTTCCAAAGAGTGCTGATTCCTATATAAAACTGGGAAAGGTAGGATGTGGAACATATAGCAATGTGTACAAAGCAAGAGATAAGCGAAGTGGGAAGATTGTTGCTTTGAAGAAAGTGAGGTTTGACACYTCMGATCCTGAGAGTATAAAGTTTATGGCGAGAGAGATTATGATACTTCASACATTAGATCATCCGAATGTGATCAAGCTTGAAGGAGTAGCAACATCAAGAATGCAATACAGTATATATTTGGTTTTTGAGTTCATGCATGCTGACCTTYCACGAATTATAGCCCGARCGGCGGTGAGACTAACTGAACCACAGATAAAGTGTTACATGCAACAACTGCTTTGTGGGCTCCAATACTGTCACGAAAAGGGTGTTATCCACCGAGATATTAAATCTTCAAACTTGTTAGTAGACACAAGAGGGGTGCTGAAAATTGCAGATTTTGGTCTTGCACATTCTTTTGACATCAAATCCAATGGCCCTCTTACAAATAAAGTGGTGACWCTTTGGTATAGAGCTCCTGAACTTCTCTTAGGTTCAACTAATTATGGATTTGGAGTTGATCTCTGGAGTGCTGGATGCCTATTGGCTGAAATGTTCGTTGGAAGACCGATAATGCCGGGAAGAACAGAGGTTGAACAGCTTCACATGATCTTCAAACTTTGTGGTTCTCCTTCAGATAATTACTATAGAAAACTGAAGTTAACAAGCAGCCATCGTCCGTCACAACGTTACAGACCTAACTATAACGGAAACTTCCCGAACCTTCCTTCGTCTTTCCTTCATCTCTTGGCCACGCTTCTTGATCTTGACCCTTCACACCGTGGCACCGCTGCCTCTGCTCTTCGAAGTGAATTTTTCAATTCAAGTCCGTTACCGTGCGACCCTTCAGACTTACCAGCAATCTACAATAATAATAATGATGAGGATGAACGAATTCATCAAAAGAGACGTAGACACAGGGTTCCGAAAAGAGGGCAAGTGTCTCAACCCAATACAAATCATGTTAGTCAATTGGAAAAGAACAACCAAACAGCTGAACATTTCAAGAGAGATTCAGAATCGTCCACCAAAGAGGATAAGAAAGAACAAGAGAAGCAGGGGCAAGAAACAGGCACTGTTAGTTCAAGCAGCACATCATCGAGCTCCAAAAATATTATGAACATGAATAATGCATCCTCAACAACATCATCAATTTTCTCTAGTAATGGCAAAACTGAAGCACATCCCAATTATGCTCTCTTACACCCATATGTGATTGGAGTGATCAATCATAATAATAAGAACGAAGCCAATAATGAATCCCACCAACGTAAGACCCTCTCAGCATTGGATCTAAGATTTGATACAGAGAAGCTATCAAATCTTTCTGAATAG	1779	0.407	MGCVFGRLMVDSPPRKQVKSKRRHGHHGNKAMTKKGSRKHHPSKYADMKRESRRQSVKENNNNNNIKNNLSGAVEQQVLRGGKESLAAPKEEKKIEREDDDEEKNIAGYEFVDGWPKWLVDNIPRYVLDTLVPKSADSYIKLGKVGCGTYSNVYKARDKRSGKIVALKKVRFDTSDPESIKFMAREIMILXTLDHPNVIKLEGVATSRMQYSIYLVFEFMHADLXRIIARXAVRLTEPQIKCYMQQLLCGLQYCHEKGVIHRDIKSSNLLVDTRGVLKIADFGLAHSFDIKSNGPLTNKVVTLWYRAPELLLGSTNYGFGVDLWSAGCLLAEMFVGRPIMPGRTEVEQLHMIFKLCGSPSDNYYRKLKLTSSHRPSQRYRPNYNGNFPNLPSSFLHLLATLLDLDPSHRGTAASALRSEFFNSSPLPCDPSDLPAIYNNNNDEDERIHQKRRRHRVPKRGQVSQPNTNHVSQLEKNNQTAEHFKRDSESSTKEDKKEQEKQGQETGTVSSSSTSSSSKNIMNMNNASSTTSSIFSSNGKTEAHPNYALLHPYVIGVINHNNKNEANNESHQRKTLSALDLRFDTEKLSNLSE*	593

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo20g2428	592	MobiDBLite	consensus disorder prediction	503	542	-	-
	Amo20g2428	592	ProSitePatterns	Protein kinases ATP-binding region signature.	145	168	IPR017441	GO:0005524
	Amo20g2428	592	SMART	serkin_6	139	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo20g2428	592	MobiDBLite	consensus disorder prediction	85	100	-	-
	Amo20g2428	592	MobiDBLite	consensus disorder prediction	1	100	-	-
	Amo20g2428	592	MobiDBLite	consensus disorder prediction	17	43	-	-
	Amo20g2428	592	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	259	271	IPR008271	GO:0004672\|GO:0006468
	Amo20g2428	592	MobiDBLite	consensus disorder prediction	58	75	-	-
	Amo20g2428	592	SUPERFAMILY	Protein kinase-like (PK-like)	134	429	IPR011009	-
	Amo20g2428	592	MobiDBLite	consensus disorder prediction	478	502	-	-
	Amo20g2428	592	MobiDBLite	consensus disorder prediction	429	542	-	-
	Amo20g2428	592	MobiDBLite	consensus disorder prediction	460	477	-	-
	Amo20g2428	592	ProSiteProfiles	Protein kinase domain profile.	139	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo20g2428	592	PANTHER	CELL DIVISION PROTEIN KINASE	84	564	-	-
	Amo20g2428	592	Gene3D	Transferase(Phosphotransferase) domain 1	222	464	-	-
	Amo20g2428	592	Gene3D	Phosphorylase Kinase; domain 1	129	221	-	-
	Amo20g2428	592	PANTHER	CYCLIN-DEPENDENT KINASE	84	564	-	-
	Amo20g2428	592	Pfam	Protein kinase domain	139	421	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo20g2428	Amo-Chr20	113670402	113674174	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo20g2428	134	469	Core Cell Cycle Gene Families	AT5G10270	43.099	1.33e-92	292

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Amo20g2428		Pkinase	6.5e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo20g2428	K08819		-	gmx:100782603	577.4