Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2427 ATGGGATGTGTCTTCGGCCGGTTTATGGTCGATTCTCCACCTCGCAAACAGGTCAAGTCTAAGCGGCGTCACGGTCACCATGGCAACAAAGCTATGACCAAGAAAGGTTCAAGGAAACATCATCCTTCTAAGTATGTGGATATGAAAAGGGAGAGTAGGAGACAGAGTGTGAAGGAGAATAATAATAATAATATTAAGAATAATTTATCCGGAGCAGTTGAACAGCAGGTTTTGCGAGGTGGAAAAGAAAGTTTGACTGCTACCAAAGAAGAGAAGAAGATTGAGAGAGAAGAGGATGATGAAGAGAAGAATATTGCAGGATATGAATTTGTTGATGGATGGCCAAAGTGGTTGGTTGATAATATCCCAAGATATGTTCTTGATACTCTTGTTCCAAAGAGTGCTGATTCCTATATAAAACTGGGAAAGGTAGGATGTGGAACATATAGCAATGTGTACAAAGCAAGAGATAAGCGAAGTGGGAAGATTGTTGCTTTGAAGAAAGTGAGGTTTGACACGTCGGATCCTGAGAGTATAAAGTTTATGGCGAGAGAGATTATGATACTTCAGACATTAGATCATCCGAATGTGATCAAGCTTGAAGGAGTAGCAACATCAAGAATGCAATACAGTATATATTTGGTTTTTGAGTTCATGCATGCTGACCTTGCACGAATTATAGCCCGATCGGCGGTGAGACTAACTGAACCACAGATAAAGTGTTACATGCAACAACTGCTTTGTGGGCTCCAATACTGTCACGAAAAGGGTGTTATCCACCGAGATATTAAATCTTCAAACTTGTTAGTAGACACAAGAGGGGTGCTGAAAATTGCAGATTTTGGTCTTGCACATTCTTTTGACATCAAATCCAATGGCCCTCTTACAAATAAAGTGGTGACACTTTGGTATAGAGCTCCTGAACTTCTCTTAGGTTCAACTAATTATGGATTTGGAGTTGATCTCTGGAGTGCTGGATGCCTATTGGCTGAAATGTTCGTTGGAAGACCGATAATGCCGGGAAGAACAGAGGTTGAACAGCTTCACATGATCTTCAAACTTTGTGGTTCTCCTTCAGATAATTACTATAGAAAACTGAAGCTAACAAGCAGCCATCGTCCGTCACAACGTTACAGACCTAACTATAACGGAAACTTCCCGAACCTTCCTTCGTCTTTCCTTCATCTCTTGGCCACGCTTCTTGATCTTGACCCTTCACACCGTGGCACCGCTGCCTCTGCTCTTCGAAGTGAATTTTTCAATTCAAGTCCGTTACCGTGCGACCCTTCAGACTTACCAGCAATCTACAATAATAATAATAATGATGAGGATGAACGAATTCATCAAAAGAGACGTAGACACAGGGTTCCGAAAAGAGGGCAAGTGTCTCAACCCAATACAAATCATGTTAGTCAATTGGAAAAGAACAATCAAACAGCTGAACATTTCAAGAGAGATTCAGAATCGTCCACCAAAGAGGATAAGAAAGAACAAGAGAAGCAGGGGCAAGAAACAGGCACTGTTAGTGCAAGCAGCACATCATGGAGCTCCAAAAATATTATGAACATGAATAATGCATCGTCAATAACATCATTAATTTTTTCTAGTAATGACAAAACTGAAGCACATCCCAATTATGCTCTCTTACATTCATATATAATTGGAGTGATCAATCACAATAATAAGAACGAAGCCAATAATAAATTTCATCAACGTAAAGCGTTGGATCTAAGATTTGATATAGAGAAGCTATCAAATCTTTTTGAATAA 1770 0.3989 MGCVFGRFMVDSPPRKQVKSKRRHGHHGNKAMTKKGSRKHHPSKYVDMKRESRRQSVKENNNNNIKNNLSGAVEQQVLRGGKESLTATKEEKKIEREEDDEEKNIAGYEFVDGWPKWLVDNIPRYVLDTLVPKSADSYIKLGKVGCGTYSNVYKARDKRSGKIVALKKVRFDTSDPESIKFMAREIMILQTLDHPNVIKLEGVATSRMQYSIYLVFEFMHADLARIIARSAVRLTEPQIKCYMQQLLCGLQYCHEKGVIHRDIKSSNLLVDTRGVLKIADFGLAHSFDIKSNGPLTNKVVTLWYRAPELLLGSTNYGFGVDLWSAGCLLAEMFVGRPIMPGRTEVEQLHMIFKLCGSPSDNYYRKLKLTSSHRPSQRYRPNYNGNFPNLPSSFLHLLATLLDLDPSHRGTAASALRSEFFNSSPLPCDPSDLPAIYNNNNNDEDERIHQKRRRHRVPKRGQVSQPNTNHVSQLEKNNQTAEHFKRDSESSTKEDKKEQEKQGQETGTVSASSTSWSSKNIMNMNNASSITSLIFSSNDKTEAHPNYALLHSYIIGVINHNNKNEANNKFHQRKALDLRFDIEKLSNLFE* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2427 589 MobiDBLite consensus disorder prediction 84 100 - -
Amo20g2427 589 PANTHER CYCLIN-DEPENDENT KINASE 83 551 - -
Amo20g2427 589 MobiDBLite consensus disorder prediction 1 100 - -
Amo20g2427 589 MobiDBLite consensus disorder prediction 17 43 - -
Amo20g2427 589 Pfam Protein kinase domain 138 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2427 589 ProSitePatterns Protein kinases ATP-binding region signature. 144 167 IPR017441 GO:0005524
Amo20g2427 589 MobiDBLite consensus disorder prediction 478 502 - -
Amo20g2427 589 Gene3D Phosphorylase Kinase; domain 1 128 220 - -
Amo20g2427 589 ProSiteProfiles Protein kinase domain profile. 138 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2427 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Amo20g2427 589 PANTHER CELL DIVISION PROTEIN KINASE 83 551 - -
Amo20g2427 589 SUPERFAMILY Protein kinase-like (PK-like) 133 428 IPR011009 -
Amo20g2427 589 MobiDBLite consensus disorder prediction 503 518 - -
Amo20g2427 589 Gene3D Transferase(Phosphotransferase) domain 1 221 461 - -
Amo20g2427 589 MobiDBLite consensus disorder prediction 460 477 - -
Amo20g2427 589 MobiDBLite consensus disorder prediction 430 518 - -
Amo20g2427 589 MobiDBLite consensus disorder prediction 58 74 - -
Amo20g2427 589 SMART serkin_6 138 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g2427 589 Coils Coil 82 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2427 Amo-Chr20 113461770 113465250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2427 133 469 Core Cell Cycle Gene Families AT5G10270 43.099 1.13e-93 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Amo20g2427 Pkinase 9.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2427 K08819 - gmx:100782603 575.859