Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2421 ATGATAAAAGGCAATAAGCTTTTTCTCTGTAAAAAAAGTCAAATAGGGTCCCCTTTGGGCCATCATAATGATATCTTCACTTCACCGCCGGTGAGAGAGGGTATGATAGATATGCACCCAAGATCCACCATCATTGTCTTTGATTTTATTTTAAATATATGGTGCCCCAAAAGTGATCAATTTCACATAAAAGGAACCATAAAAAGTGAAAGATATATGGATCATCCGGCATGGGGTCAGGTAACAGCAGAAGATTGTGTGATGATGATGAGGGTGGGTAACAAAAGAGGAGGAGATGTTCATAGCCATGTAGGGTTAGGGATTGCAGCGATGAAGATGAAAATGAAGAAGACGAAAGTGAGAAGGAAGGTGAGGGAGCCTAGGTTTTGCTTCAAGACCATGAGTGATGTCGATGTTCTCGACGACGGTTACAAATGGAGAAAGTACGGCCAGAAAGTCGTCAAGAACACACAACACCCCAGAAGCTACTACCGTTGCACAGAAGAAAAGTGTAGAGTGAAGAAACGAGTGGAGCGCTTAGCTGAGGATCCAAGGATGGTTATAACAACGTATGAAGGAAGACATGTTCATTCTCCCTCCAACGACCTCCAAGCATCCGAAACTACTTCTCAACTCACCGATTTCCTGTGGTAG 654 0.4312 MIKGNKLFLCKKSQIGSPLGHHNDIFTSPPVREGMIDMHPRSTIIVFDFILNIWCPKSDQFHIKGTIKSERYMDHPAWGQVTAEDCVMMMRVGNKRGGDVHSHVGLGIAAMKMKMKKTKVRRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTEEKCRVKKRVERLAEDPRMVITTYEGRHVHSPSNDLQASETTSQLTDFLW* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2421 217 Pfam WRKY DNA -binding domain 141 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g2421 217 Gene3D WRKY domain 127 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo20g2421 217 SUPERFAMILY WRKY DNA-binding domain 132 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo20g2421 217 ProSiteProfiles WRKY domain profile. 135 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g2421 217 SMART WRKY_cls 140 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g2421 217 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 94 207 IPR044810 GO:0003700
Amo20g2421 217 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 94 207 - -
Amo20g2421 217 MobiDBLite consensus disorder prediction 197 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2421 Amo-Chr20 112975267 112981106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2421 99 217 WRKY Transcription Factor Family AT4G39410 70.161 5.39e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo20g2421 WRKY 1.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2421 - - gmx:100799241 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1908 10 68598308 68600435 Amo20g2421 20 112975267 112981106 hybridization