Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2415 ATGGAGGACTACTATTTTGGAAACCCTAATTATTCTAACCCTAATTGCGCTCATTCTTTCGTGACTATGGCTACTCCCACCTCAGATTTCATGTTATCTGATTATCTATTGCTTGATGATGATGTTATTATGATTGATAATCATCATCAACATCAAGATCAAGAGTCTTGGTCACAGAGTACTGAATCATCTTCGTTGGCAGCAGCATCAAGCAATGTCAATCACGAATTTGGTGGTGCAACAACCTCCAGCCACAATAACAACATAAAATGCAAAAATAATGTGAGTAAGCGAAACAAGCAGGTAGAAGCGAGGCAAAGGGTGGTGTTCAGAACTAGATCGGAGCTAGAGGTCATGGATGATGGATTTAAATGGAGGAAGTATGGAAAGAAGTCAGTAAAGAACAGTCCCAATCCTAGGAACTATTACAAGTGCTCGAGTGTAGGATGCGGTGTGAAGAAAAGAGTGGAAAGGGATGCAGAAGACAGGAGCTATGTGTTAACAAGTTATGACGGTGTTCACAATCACCAAAGCCCTTCTTCTAACTCCTACTACACTACTTCTCCATTCTCCATCTTCCATTCTAATGATATTAATTGGTCCCTCCATGCTCCTGCTGTAAACTCATCATCCTCTAATTCCTAG 645 0.4078 MEDYYFGNPNYSNPNCAHSFVTMATPTSDFMLSDYLLLDDDVIMIDNHHQHQDQESWSQSTESSSLAAASSNVNHEFGGATTSSHNNNIKCKNNVSKRNKQVEARQRVVFRTRSELEVMDDGFKWRKYGKKSVKNSPNPRNYYKCSSVGCGVKKRVERDAEDRSYVLTSYDGVHNHQSPSSNSYYTTSPFSIFHSNDINWSLHAPAVNSSSSNS* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2415 214 ProSiteProfiles WRKY domain profile. 114 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g2415 214 MobiDBLite consensus disorder prediction 50 98 - -
Amo20g2415 214 Pfam WRKY DNA -binding domain 120 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g2415 214 SMART WRKY_cls 119 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g2415 214 Gene3D WRKY domain 106 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo20g2415 214 MobiDBLite consensus disorder prediction 56 95 - -
Amo20g2415 214 SUPERFAMILY WRKY DNA-binding domain 111 179 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo20g2415 214 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 15 184 IPR044810 GO:0003700
Amo20g2415 214 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 15 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2415 Amo-Chr20 112733705 112736940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2415 68 204 WRKY Transcription Factor Family AT5G64810 52.899 4.88e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo20g2415 WRKY 5.5e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2415 - - aip:107621044 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g2971 06 95775393 95780941 Amo20g2415 20 112733705 112736940 PCT