Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2397 ATGGCCAAGCACCAATTGAATTACTCCGATTGCCACAGCACCGCAATCAACACCAAGCTCCGTCGTCAGCTCCCTCCAGCTCACGATGACACCGATTATCGAACCCATCAAAGTCTTCGTTCTCGCTACCTTGCCTTCAACAACATGATTAACGTTACAAAACCAAGAGAACAAGTGGCTGATGCAAAAGCTCTGTTGGACATAATGAAATCCTTGGTAATGTCTATGAAGGGTCATGCTAACGGTGGAGTCACTCCTTCAGAATTTGTATCGCACATTCTTGAAGAATTTGGAGGACAGGGCAGATCAAGTACTAGCACAGAACGTTGCACCAAAAACTCAACAGCTTGGAATGATATTGGACTATCACTTGACGGAGGTCCAAGAGAAGTGAAAGCTAATACAGATAAAAATATGTTAACGATGTTTAACATCTTAAGGAAAAATAGTGTTGTTAAGCTTGAGAATTTGATTTTGAATAGGAACTCCTTTGCTCAAATAGTGGAGAATTTACTCGCTTTATCATTCATAGTCAAAGATGGGCGAGCTGAAATAAAAGTCAACGAGGCTGGATCACAACTAGTACTGTCACCCAGAAATTCCCCTCGTGCAAATGCAATTCGTGCTGGGGATATTGCTTTCGGTCACTTTATGTTCAGATTGGATTTTAAGGATTGGAAGCTAATGATCGATTCTTTTGGGGTTGTGGAGGATCTAATGCCTTATAGGGAATAG 735 0.4163 MAKHQLNYSDCHSTAINTKLRRQLPPAHDDTDYRTHQSLRSRYLAFNNMINVTKPREQVADAKALLDIMKSLVMSMKGHANGGVTPSEFVSHILEEFGGQGRSSTSTERCTKNSTAWNDIGLSLDGGPREVKANTDKNMLTMFNILRKNSVVKLENLILNRNSFAQIVENLLALSFIVKDGRAEIKVNEAGSQLVLSPRNSPRANAIRAGDIAFGHFMFRLDFKDWKLMIDSFGVVEDLMPYRE* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2397 244 PANTHER UNCHARACTERIZED 126 244 IPR027786 GO:0005634|GO:0006281|GO:0030915
Amo20g2397 244 PANTHER UNCHARACTERIZED 51 123 IPR027786 GO:0005634|GO:0006281|GO:0030915
Amo20g2397 244 Pfam Nse4 C-terminal 152 239 IPR014854 -
Amo20g2397 244 PANTHER NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 4 51 123 - -
Amo20g2397 244 PANTHER NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 4 126 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2397 Amo-Chr20 111957395 111961539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2397 39 244 Non-SMC Element family AT1G51130 38.989 8.31e-58 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2397 K22825 - gmx:100781485 241.891